hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02505045/chunk_1/iprscan-20080502-02505045.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1437 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 101.8 1.9e-27 9 PF00560.23.fs Leucine Rich Repeat 85.4 1.7e-22 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 2/9 593 614 .. 1 24 [] 9.9 3.8 PF00560.23.ls 3/9 616 636 .. 1 24 [] 11.7 1.7 PF00560.23.ls 4/9 641 662 .. 1 24 [] 7.9 8.8 PF00560.23.ls 5/9 664 685 .. 1 24 [] 13.5 0.74 PF00560.23.fs 6/10 664 685 .. 1 24 [] 11.6 0.041 PF00560.23.fs 7/10 687 708 .. 1 24 [] 18.4 0.00057 PF00560.23.ls 6/9 687 708 .. 1 24 [] 20.2 0.0068 PF00560.23.ls 7/9 710 731 .. 1 24 [] 8.4 7 PF00560.23.ls 8/9 733 754 .. 1 24 [] 10.7 2.6 PF00560.23.fs 10/10 756 777 .. 1 24 [] 11.3 0.05 PF00560.23.ls 9/9 756 777 .. 1 24 [] 13.1 0.92 Alignments of top-scoring domains: PF00560.23.ls: domain 2 of 9, from 593 to 614: score 9.9, E = 3.8 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+eL+L +C l+ +p+s+ +l KIAA1437 593 NLTELELIRC--DLE-RIPHSIfSL 614 PF00560.23.ls: domain 3 of 9, from 616 to 636: score 11.7, E = 1.7 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+e+dL + N +l +++++ + ++ KIAA1437 616 NLQEIDLKD-N-NL-KTIEE-IiSF 636 PF00560.23.ls: domain 4 of 9, from 641 to 662: score 7.9, E = 8.8 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ L L + N ++ +p ++nl KIAA1437 641 RLTCLKLWY-N-HIA-YIPIQIgNL 662 PF00560.23.ls: domain 5 of 9, from 664 to 685: score 13.5, E = 0.74 *->nLeeLdLsgCNpsltgslpssl.nl<-* nLe L+L++ N +++ ++p l + KIAA1437 664 NLERLYLNR-N-KIE-KIPTQLfYC 685 PF00560.23.fs: domain 6 of 10, from 664 to 685: score 11.6, E = 0.041 *->nLeeLdLsgCNpsltgslpssl.nl<-* nLe L+L++ N +++ ++p l + KIAA1437 664 NLERLYLNR-N-KIE-KIPTQLfYC 685 PF00560.23.fs: domain 7 of 10, from 687 to 708: score 18.4, E = 0.00057 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++LdLs+ N +lt lp++++ l KIAA1437 687 KLRYLDLSH-N-NLT-FLPADIgLL 708 PF00560.23.ls: domain 6 of 9, from 687 to 708: score 20.2, E = 0.0068 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++LdLs+ N +lt lp++++ l KIAA1437 687 KLRYLDLSH-N-NLT-FLPADIgLL 708 PF00560.23.ls: domain 7 of 9, from 710 to 731: score 8.4, E = 7 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L + N +++ +lp++l + KIAA1437 710 NLQNLAITA-N-RIE-TLPPELfQC 731 PF00560.23.ls: domain 8 of 9, from 733 to 754: score 10.7, E = 2.6 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ L+L++ N l+ slps ++ l KIAA1437 733 KLRALHLGN-N-VLQ-SLPSRVgEL 754 PF00560.23.fs: domain 10 of 10, from 756 to 777: score 11.3, E = 0.05 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+ ++L+g N +l+ lp++l+ + KIAA1437 756 NLTQIELRG-N-RLE-CLPVELgEC 777 PF00560.23.ls: domain 9 of 9, from 756 to 777: score 13.1, E = 0.92 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+ ++L+g N +l+ lp++l+ + KIAA1437 756 NLTQIELRG-N-RLE-CLPVELgEC 777 //