# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh05535.fasta.huge -Q ../query/KIAA1433.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1433, 652 aa vs ./tmplib.24314 library 1986853 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 14.5655+/- 0.012; mu= -31.5707+/- 0.804 mean_var=539.9911+/-132.930, 0's: 0 Z-trim: 4 B-trim: 136 in 1/39 Lambda= 0.055193 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1758 ( 1662 res) fh20539(revised) (1662) 833 81.1 8.4e-16 KIAA1275 ( 1140 res) hk10413 (1140) 440 49.7 1.6e-06 >>KIAA1758 ( 1662 res) fh20539(revised) (1662 aa) initn: 1264 init1: 464 opt: 833 Z-score: 375.6 bits: 81.1 E(): 8.4e-16 Smith-Waterman score: 1315; 40.426% identity (63.982% similar) in 658 aa overlap (13-652:29-606) 10 20 30 40 KIAA14 GLKCDSADYQAFKMNLEKLSKPELLTLFSILEGELEARDLVIEA ..... ::: :: :.:..::::::::::::: KIAA17 ATDGASCEPDLSRAPEDAAGAAAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEA 10 20 30 40 50 60 50 60 70 80 90 100 KIAA14 LKAQHRDTFIEERYGKYNISDPLMALQRDFETLKEKNDGEKQPVCTNPLSILKVVMKQCK :.:.....::.::::..:..::..:::::.:. .: ::.::::::::::..:: .:: KIAA17 LRARRKEVFIQERYGRFNLNDPFLALQRDYEA--GAGDKEKKPVCTNPLSILEAVMAHCK 70 80 90 100 110 110 120 130 140 150 160 KIAA14 NMQERMLSQLAAAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEK .::::: .::::::::..: ::.:: KIAA17 KMQERMSAQLAAAESRQKK------------------------------------LEMEK 120 130 140 170 180 190 200 210 220 KIAA14 SQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKEK :.. .:.:.:::...:::::...::. ::: :::. ..:. ::.:: .. :::.:: KIAA17 LQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDVMAKLEEEK 150 160 170 180 190 200 230 240 250 260 270 280 KIAA14 SRVSKLEEELAAERKRGLQTEAQVEKQLSEFDIEREQLRAKLNREENRTKTLKEEMESLK .....:::::.::..:. . :::.:::::::: ::::::::::::: .: ::::..... KIAA17 KKTNELEEELSAEKRRSTEMEAQMEKQLSEFDTEREQLRAKLNREEAHTTDLKEEIDKMR 210 220 230 240 250 260 290 300 310 320 330 340 KIAA14 KIVKDLEASHQHSSPNEQLKKPVT----VSKGTATEPLMLMSVFCQTESFPAERTHGSNI :....:. . . :.:. .: . . :: ...:: . :: :::. . : ... KIAA17 KMIEQLKRG-SDSKPSLSLPRKTKDRRLVSISVGTEGTVTRSVACQTDLVTENADHMKKL 270 280 290 300 310 320 350 360 370 380 390 KIAA14 AKMTNTGLPGPATPAYSYAKTNGHCDPEIQTT----RELTAGNNVENQVPPREKSVALAQ .: :. ..: : .. : .. :. . :. . .:: : KIAA17 P-LTMPVKPSTGSPLVSANAKGSVCTSATMARPGIDRQASYGDLIGASVPAFPPPSA--- 330 340 350 360 370 400 410 420 430 440 450 KIAA14 EKPVENGGCPVGIETPVPMPS--PLSSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSS .: ::: : :: : : :: :... : .. . ... . ..: . : KIAA17 NKIEENG--PSTGSTPDPTSSTPPLPSNAA---PPTAQTPGIAPQNSQAPPM------HS 380 390 400 410 420 460 470 480 490 500 510 KIAA14 ASSPGYQSSYQVGINQRFHAARHKFQSQA-DQDQQASGLQSPPSRDLSPTLIDNSAAKQL :: ..: . :.: :..::: .::..: : ::... :::::::.::: :: .:::: KIAA17 LHSPCANTSLHPGLNPRIQAARFRFQGNANDPDQNGNTTQSPPSRDVSPTSRDNLVAKQL 430 440 450 460 470 480 520 530 540 550 560 570 KIAA14 ARNTVTQVLSRFTSQQG--PIKPVSPNSSPFGTDYRNLANTANPRGDTSHSPTPGKVSSP :::::::.:::::: :. : .: : : ::.. : :..: KIAA17 ARNTVTQALSRFTSPQAGAPSRPGVP-----------------PTGDVGTHPPVGRTS-- 490 500 510 520 580 590 600 610 620 KIAA14 LSPLSPGIKSPTIPRAERGNPPPIPPKKPGLTPSPSATTPLTKT--HSQAASLTTAE-DL .:. . :..::::::::::::::. .:: : :. :. :: : :. : KIAA17 -------LKTHGVARVDRGNPPPIPPKKPGLSQTPSPPHPQLKVIIDSSRASNTGAKVDN 530 540 550 560 570 580 630 640 650 KIAA14 ASSCSSNTVVANGKDV--ELLLPTSS . :. . . .:. : : :: :: KIAA17 KTVASTPSSLPQGNRVINEENLPKSSSPQLPPKPSIDLTVAPAGCAVSALATSQVGAWPA 590 600 610 620 630 640 >>KIAA1275 ( 1140 res) hk10413 (1140 aa) initn: 454 init1: 354 opt: 440 Z-score: 208.8 bits: 49.7 E(): 1.6e-06 Smith-Waterman score: 440; 29.795% identity (65.753% similar) in 292 aa overlap (35-323:18-307) 10 20 30 40 50 60 KIAA14 DSADYQAFKMNLEKLSKPELLTLFSILEGELEARDLVIEALKAQH-RDTFIEERYGKYNI :.::. ::. ::... . .: .::. . KIAA12 AQYAIYIVSRLILLHFLLQAREDVIHMLKTEKTKPEVLEAHYGSAEP 10 20 30 40 70 80 90 100 110 120 KIAA14 SDPLMALQRDFETLKEKNDGEKQPVCTNPLSILKVVMKQCKNMQERMLSQLAAAESRHRK : .:.:: .::. :: : .:.: : . .. :. .::: :: ::. ::. KIAA12 EKVLRVLHRDAILAQEKSIGED--VYEKPISELDRLEEKQKETYRRMLEQLLLAEKCHRR 50 60 70 80 90 100 130 140 150 160 170 180 KIAA14 VILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEKSQVKKFEKEQKKLSSQLEE .. .::.:...:.. ..:: : .::.::::: . :: ::. . :::. : ..:.. KIAA12 TVYELENEKHKHTDYMNKSDDFTNLLEQERERLKKLLEQEKAYQARKEKENAKRLNKLRD 110 120 130 140 150 160 190 200 210 220 230 240 KIAA14 ERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKEKSRVSKLEEELAAERKRGLQ : . :... ::: : . .. . ..::. .:. ::..:. ... . . .:.. :. KIAA12 ELVKLKSFALMLVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLK 170 180 190 200 210 220 250 260 270 280 290 300 KIAA14 TEAQVEKQLSEFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQL :.. :.. :.:. :.:.. ::: .:.... :. .. .: . ...:: .... . :. KIAA12 LEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEE 230 240 250 260 270 280 310 320 330 340 350 360 KIAA14 KKPVT--VSKGTATEPLMLMSVFCQTESFPAERTHGSNIAKMTNTGLPGPATPAYSYAKT . . ..:: . .. : KIAA12 LQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHS 290 300 310 320 330 340 652 residues in 1 query sequences 1986853 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:17 2008 done: Thu Dec 18 15:22:18 2008 Total Scan time: 0.530 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]