hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02405391/chunk_1/iprscan-20080502-02405391.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1431 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 384.4 6.9e-111 14 SM00349 236.2 2.7e-66 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/2 126 186 .. 1 62 [] 151.4 9.4e-41 SM00349 2/2 255 311 .. 1 62 [] 84.9 9.9e-21 SM00355 1/14 443 465 .. 1 23 [] 29.5 0.00046 SM00355 2/14 471 493 .. 1 23 [] 29.0 0.00067 SM00355 3/14 499 522 .. 1 23 [] 24.7 0.013 SM00355 4/14 528 550 .. 1 23 [] 24.9 0.011 SM00355 5/14 556 578 .. 1 23 [] 27.3 0.0021 SM00355 6/14 584 606 .. 1 23 [] 27.1 0.0024 SM00355 7/14 612 634 .. 1 23 [] 28.8 0.00073 SM00355 8/14 640 662 .. 1 23 [] 25.2 0.009 SM00355 9/14 668 690 .. 1 23 [] 28.8 0.00077 SM00355 10/14 696 718 .. 1 23 [] 29.2 0.00055 SM00355 11/14 724 746 .. 1 23 [] 25.1 0.0099 SM00355 12/14 752 774 .. 1 23 [] 26.9 0.0027 SM00355 13/14 780 802 .. 1 23 [] 30.8 0.00018 SM00355 14/14 808 830 .. 1 23 [] 26.9 0.0028 Alignments of top-scoring domains: SM00349: domain 1 of 2, from 126 to 186: score 151.4, E = 9.4e-41 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF DVAVdFsqEEWe+L p QrnLYR VMlENY+nL+SLG ++vsk KIAA1431 126 VTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLASLG-LCVSK 171 pdliskLEqgeEpwi<-* pd+is LEqg+Epw+ KIAA1431 172 PDVISSLEQGKEPWT 186 SM00349: domain 2 of 2, from 255 to 311: score 84.9, E = 9.9e-21 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk Vt++ AVdF q+ L+paQ+n++++ +EN s L S G ++v+k KIAA1431 255 VTIKNLAVDFRQQ----LHPAQKNFCKNGIWENNSDLGSAG-HCVAK 296 pdliskLEqgeEpwi<-* pdl+s+LEq++Epw+ KIAA1431 297 PDLVSLLEQEKEPWM 311 SM00355: domain 1 of 14, from 443 to 465: score 29.5, E = 0.00046 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+k+f++ ++L+ H+r+H KIAA1431 443 FKCNE-CKKTFTQSsSLTVHQRIH 465 SM00355: domain 2 of 14, from 471 to 493: score 29.0, E = 0.00067 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ +++ rH+r H KIAA1431 471 YKCNE-CGKAFSDGsSFARHQRCH 493 SM00355: domain 3 of 14, from 499 to 522: score 24.7, E = 0.013 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C + Cgk f + ++L+rH r H KIAA1431 499 YECIE-CGKAFIQNtSLIRHWRyYH 522 SM00355: domain 4 of 14, from 528 to 550: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* + C Cgk fs++ L++H r+H KIAA1431 528 FDCID-CGKAFSDHiGLNQHRRIH 550 SM00355: domain 5 of 14, from 556 to 578: score 27.3, E = 0.0021 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+ksf+ ++L+ H+r+H KIAA1431 556 YKCDV-CHKSFRYGsSLTVHQRIH 578 SM00355: domain 6 of 14, from 584 to 606: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k fs++ +L++H+rvH KIAA1431 584 YECDV-CRKAFSHHaSLTQHQRVH 606 SM00355: domain 7 of 14, from 612 to 634: score 28.8, E = 0.00073 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f++ +L H+r+H KIAA1431 612 FKCKE-CGKAFRQNiHLASHLRIH 634 SM00355: domain 8 of 14, from 640 to 662: score 25.2, E = 0.009 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgksfs ++L H+r+H KIAA1431 640 FECAE-CGKSFSISsQLATHQRIH 662 SM00355: domain 9 of 14, from 668 to 690: score 28.8, E = 0.00077 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k f++k +L +H+++H KIAA1431 668 YECKV-CSKAFTQKaHLAQHQKTH 690 SM00355: domain 10 of 14, from 696 to 718: score 29.2, E = 0.00055 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+ ++L++H+rvH KIAA1431 696 YECKE-CGKAFSQTtHLIQHQRVH 718 SM00355: domain 11 of 14, from 724 to 746: score 25.1, E = 0.0099 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk f + ++ ++H+r H KIAA1431 724 YKCME-CGKAFGDNsSCTQHQRLH 746 SM00355: domain 12 of 14, from 752 to 774: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f++k++L+ H r+H KIAA1431 752 YECIE-CGKAFKTKsSLICHRRSH 774 SM00355: domain 13 of 14, from 780 to 802: score 30.8, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs++++L H+r+H KIAA1431 780 YECSV-CGKAFSHRqSLSVHQRIH 802 SM00355: domain 14 of 14, from 808 to 830: score 26.9, E = 0.0028 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k+f + ++L++H rvH KIAA1431 808 YECKE-CRKTFIQIgHLNQHKRVH 830 //