hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02354368/chunk_1/iprscan-20080502-02354368.nocrc
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Query sequence: KIAA1428
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00462                                                  45.6    6.8e-09   1
SM00233                                                  27.6     0.0017   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     278   377 ..     1    82 []    27.6   0.0017
SM00462     1/1     497   636 ..     1   156 []    45.6  6.8e-09

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 278 to 377: score 27.6, E = 0.0017
                   *->vikeGwLlkks.....k.swkkryfvLfngvLlyyksk..kpkgsip
                      + k G+L  + +++  +++w + + +  +g L+     + +    ++
    KIAA1428   278    TRKAGYLNARNktglvSsTWDRQFYFTQGGNLMSQARGdvAGGLAMD 324  

                   Lsgcsvre.p......cFeivt.dr..tlllqAeseeereeWvealqsai
                   +++csv   + ++++ cF+i++ d++++ +lqAes+++ eeW+  +++ +
    KIAA1428   325 IDNCSVMAvDcedrryCFQITSfDGkkSSILQAESKKDHEEWICTINNIS 374  

                   aka<-*
                   ++    
    KIAA1428   375 KQI    377  

SM00462: domain 1 of 1, from 497 to 636: score 45.6, E = 6.8e-09
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.....se
                      + ++ f V++LGs+ev++ +        ++v+ e +r++   +    
    KIAA1428   497    ILHQLFIVRFLGSMEVKSDD-------HPDVVYETMRQILaaraiHN 536  

                   kkkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgd
                     ++++ +l v+ d++klid++t+  ++++pl+ +   a ++        
    KIAA1428   537 IFRMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQ-------- 578  

                   gstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigqa
                      +++r+Fg++ r  +++   ++ +   C++F++ ++  e i+ ++g a
    KIAA1428   579 ---ENKRLFGFVLRTSSGRS--ESNLSSVCYIFESNNEG-EKICDSVGLA 622  

                   Fqvayelklkarse<-*
                    q a +  l++r +   
    KIAA1428   623 KQIALHAELDRRAS    636  

//