hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02354368/chunk_1/iprscan-20080502-02354368.nocrc
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Query sequence: KIAA1428
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID)    29.5    2.1e-08   1
PF00169.19.fs PH domain                                       26.3    1.5e-07   2
PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID)    31.3    2.5e-07   1
PF00169.19.ls PH domain                                       27.2    5.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/2     278   375 ..     1    92 []    25.2  3.2e-07
PF00169.19.ls   1/1     278   375 ..     1    92 []    27.2  5.2e-05
PF00640.13.fs   1/1     502   633 ..     1   165 []    29.5  2.1e-08
PF00640.13.ls   1/1     502   633 ..     1   165 []    31.3  2.5e-07

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 2, from 278 to 375: score 25.2, E = 3.2e-07
                   *->vikeGwLlkkg....gkkswkkRyfvLfddvLlyykdkkkkpkgsip
                        k G+L  + +++   ++w + + + ++++L+    ++      ++
    KIAA1428   278    TRKAGYLNARNktglVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMD 324  

                   LsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeWvkaiqsai
                   +++++v+ v+  +r++cF+i++ d++++ +lqaes+++ +eW+  i++ +
    KIAA1428   325 IDNCSVMAVDCEDRRYCFQITSfDGkKSSILQAESKKDHEEWICTINNIS 374  

                   r<-*
                   +   
    KIAA1428   375 K    375  

PF00169.19.ls: domain 1 of 1, from 278 to 375: score 27.2, E = 5.2e-05
                   *->vikeGwLlkkg....gkkswkkRyfvLfddvLlyykdkkkkpkgsip
                        k G+L  + +++   ++w + + + ++++L+    ++      ++
    KIAA1428   278    TRKAGYLNARNktglVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMD 324  

                   LsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeWvkaiqsai
                   +++++v+ v+  +r++cF+i++ d++++ +lqaes+++ +eW+  i++ +
    KIAA1428   325 IDNCSVMAVDCEDRRYCFQITSfDGkKSSILQAESKKDHEEWICTINNIS 374  

                   r<-*
                   +   
    KIAA1428   375 K    375  

PF00640.13.fs: domain 1 of 1, from 502 to 633: score 29.5, E = 2.1e-08
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      F v++LGs+eV++ +         dv+ e ++++ +a          
    KIAA1428   502    FIVRFLGSMEVKSDDH-------PDVVYETMRQILAA---------- 531  

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                        +   + + +t+ +L ++ d lkl+d++t   + +  ++pl+ +  
    KIAA1428   532 -----RAIHNIFRMTESHLLVTCDCLKLIDPQT---QVTRLTFPLPCVVL 573  

                   iavggDpdVdlrtFayarr.s.qdiiaadgatgkfaCHvFecekgkqlAe
                    a   + + ++r F++  r+s+       + ++   C++Fe+      +e
    KIAA1428   574 YAT--HQE-NKRLFGFVLRtSsGR--SESNLSS--VCYIFESNN---EGE 613  

                   diaqavGqAFevaYqeflra<-*
                    i  +vG A + a+   l++   
    KIAA1428   614 KICDSVGLAKQIALHAELDR    633  

PF00640.13.ls: domain 1 of 1, from 502 to 633: score 31.3, E = 2.5e-07
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      F v++LGs+eV++ +         dv+ e ++++ +a          
    KIAA1428   502    FIVRFLGSMEVKSDDH-------PDVVYETMRQILAA---------- 531  

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                        +   + + +t+ +L ++ d lkl+d++t   + +  ++pl+ +  
    KIAA1428   532 -----RAIHNIFRMTESHLLVTCDCLKLIDPQT---QVTRLTFPLPCVVL 573  

                   iavggDpdVdlrtFayarr.s.qdiiaadgatgkfaCHvFecekgkqlAe
                    a   + + ++r F++  r+s+       + ++   C++Fe+      +e
    KIAA1428   574 YAT--HQE-NKRLFGFVLRtSsGR--SESNLSS--VCYIFESNN---EGE 613  

                   diaqavGqAFevaYqeflra<-*
                    i  +vG A + a+   l++   
    KIAA1428   614 KICDSVGLAKQIALHAELDR    633  

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