hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02290139/chunk_1/iprscan-20080502-02290139.nocrc
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Query sequence: KIAA1424
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 222.9    2.8e-62   1
SM00233                                                  72.7    4.7e-17   1
SM00228                                                  71.1    1.4e-16   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00228     1/1      44   145 ..     1    80 []    71.1  1.4e-16
SM00233     1/1     918  1028 ..     1    82 []    72.7  4.7e-17
SM00324     1/1    1145  1322 ..     1   193 []   222.9  2.8e-62

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 44 to 145: score 71.1, E = 1.4e-16
                   *->gglGfsivg..................................gifv
                      +g+Gf+++     ++++  + + +++++++++++++++ ++ + ifv
    KIAA1424    44    QGFGFTLRHfivyppesaiqfsykdeengnrggkqrnrlepmdTIFV 90   

                   ssvvpGspAakaGrkslglLkvGDvIleVNGetsvegltheeavdllkka
                   ++v++G+pA  aG      L+ GD+I++VNG +sv g+t+ ++++l++++
    KIAA1424    91 KQVKEGGPAFEAG------LCTGDRIIKVNG-ESVIGKTYSQVIALIQNS 133  

                   ggggvGekvtLtvlRgg<-*
                         ++++L v +++   
    KIAA1424   134 -----DTTLELSVMPKD    145  

SM00233: domain 1 of 1, from 918 to 1028: score 72.7, E = 4.7e-17
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                        keGwL+ +   ++++++ +++ + wk+ y+vL++++L++yk+k++
    KIAA1424   918    AAKEGWLHFRPlvtdkgkrvggsIrPWKQMYVVLRGHSLYLYKDKre 964  

                   .....kpkgsipLsgcsvre.p.......cFeivt.drtlllqAeseeer
                   ++++++   +i+++ c ++ + ++ +++++F+++t+d + l+qAe+ +++
    KIAA1424   965 qttpsEEEQPISVNACLIDIsYsetkrknVFRLTTsDCECLFQAEDRDDM 1014 

                   eeWvealqsaiaka<-*
                     W++ +q+ ++ +   
    KIAA1424  1015 LAWIKTIQESSNLN    1028 

SM00324: domain 1 of 1, from 1145 to 1322: score 222.9, E = 2.8e-62
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + iP+iv+ C+  +e+rGl+  GIYRv+G++  +  ++e++++g+ +
    KIAA1424  1145    RYIPLIVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMAd 1191 

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                    ++           d+ ++d +++++lLK+++R+LPePL+t + y +fie
    KIAA1424  1192 IDIQ----------DDKWRDLNVISSLLKSFFRKLPEPLFTNDKYADFIE 1231 

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a +               ed+  rl+ l++l++ LP+++++tL++L  HL
    KIAA1424  1232 ANRK--------------EDPLDRLKTLKRLIHDLPEHHYETLKFLSaHL 1267 

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                   + Vae+se+NkM +rNLAivFgPtL r ++++ ++ +t++  q k+vetl
    KIAA1424  1268 KTVAENSEKNKMEPRNLAIVFGPTLVRTSednmthmVTHMPDQYKIVETL 1317 

                   ienad<-*
                   i+++d   
    KIAA1424  1318 IQHHD    1322 

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