hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02254185/chunk_1/iprscan-20080502-02254185.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1422
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF03493.8.fs Calcium-activated BK potassium channel a   124.8      9e-36   1
PF03493.8.ls Calcium-activated BK potassium channel a   126.6    6.3e-35   1
PF07885.6.fs Ion channel                                 56.1    6.5e-16   1
PF07885.6.ls Ion channel                                 58.0    2.8e-14   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF07885.6.fs   1/1     299   377 ..     1    81 []    56.1  6.5e-16
PF07885.6.ls   1/1     299   377 ..     1    81 []    58.0  2.8e-14
PF03493.8.fs   1/1     516   637 ..     1   148 []   124.8    9e-36
PF03493.8.ls   1/1     516   637 ..     1   148 []   126.6  6.3e-35

Alignments of top-scoring domains:
PF07885.6.fs: domain 1 of 1, from 299 to 377: score 56.1, E = 6.5e-16
                   *->iilllvlifgtvyyalepeegwe.wsfldalYFsfvTlTTiGYGDiv
                      ++l+lv+++ + + +l  e   e++s+l+++YF++vT++T+GYGD++
    KIAA1422   299    TLLCLVFTGTCGIQHL--ERAGEnLSLLTSFYFCIVTFSTVGYGDVT 343  

                   PlstdaGRlftivyiliGiplfalllavlgrflte<-*
                   P   +  +l++++ i++ + +  l +  l+ + +e   
    KIAA1422   344 PKIWPS-QLLVVIMICVALVVLPLQFEELVYLWME    377  

PF07885.6.ls: domain 1 of 1, from 299 to 377: score 58.0, E = 2.8e-14
                   *->iilllvlifgtvyyalepeegwe.wsfldalYFsfvTlTTiGYGDiv
                      ++l+lv+++ + + +l  e   e++s+l+++YF++vT++T+GYGD++
    KIAA1422   299    TLLCLVFTGTCGIQHL--ERAGEnLSLLTSFYFCIVTFSTVGYGDVT 343  

                   PlstdaGRlftivyiliGiplfalllavlgrflte<-*
                   P   +  +l++++ i++ + +  l +  l+ + +e   
    KIAA1422   344 PKIWPS-QLLVVIMICVALVVLPLQFEELVYLWME    377  

PF03493.8.fs: domain 1 of 1, from 516 to 637: score 124.8, E = 9e-36
                   *->nipkwdwkagiddvicieelKlgliAqsclcPGfsTllaNLFttrsf
                      +++k ++k++ d+v+c+ee K++ +A +c+cP  sTl+++L++t+++
    KIAA1422   516    PENKFHVKFA-DHVVCEEECKYAMLALNCICPATSTLITLLVHTSRG 561  

                   keseedtfdlwklyLvgnemeletqtlseeWfsgkwfgqynelsrnklyl
                    e++e +++ w +                     ++ +++ne +++++++
    KIAA1422   562 QEGQE-SPEQWQRM--------------------YGRCSGNEVYHIRMGD 590  

                   lavplelvGreFrslsfsiyekdgilligvdtagLPffiaenslnevkra
                   ++++ e++G++F++++f++++k+g+ lig+++     +   + ln+++r+
    KIAA1422   591 SKFFREYEGKSFTYAAFHAHKKYGVCLIGLKRED---NKS-ILLNPGPRH 636  

                   f<-*
                   +   
    KIAA1422   637 I    637  

PF03493.8.ls: domain 1 of 1, from 516 to 637: score 126.6, E = 6.3e-35
                   *->nipkwdwkagiddvicieelKlgliAqsclcPGfsTllaNLFttrsf
                      +++k ++k++ d+v+c+ee K++ +A +c+cP  sTl+++L++t+++
    KIAA1422   516    PENKFHVKFA-DHVVCEEECKYAMLALNCICPATSTLITLLVHTSRG 561  

                   keseedtfdlwklyLvgnemeletqtlseeWfsgkwfgqynelsrnklyl
                    e++e +++ w +                     ++ +++ne +++++++
    KIAA1422   562 QEGQE-SPEQWQRM--------------------YGRCSGNEVYHIRMGD 590  

                   lavplelvGreFrslsfsiyekdgilligvdtagLPffiaenslnevkra
                   ++++ e++G++F++++f++++k+g+ lig+++     +   + ln+++r+
    KIAA1422   591 SKFFREYEGKSFTYAAFHAHKKYGVCLIGLKRED---NKS-ILLNPGPRH 636  

                   f<-*
                   +   
    KIAA1422   637 I    637  

//