hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02202031/chunk_1/iprscan-20080502-02202031.nocrc
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Query sequence: KIAA1419
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00307.21.fs Calponin homology (CH) domain                   62.2    5.1e-16   1
PF00307.21.ls Calponin homology (CH) domain                   61.5    2.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00307.21.ls   1/1     118   224 ..     1   122 []    61.5  2.5e-15
PF00307.21.fs   1/1     121   224 ..     4   122 .]    62.2  5.1e-16

Alignments of top-scoring domains:
PF00307.21.ls: domain 1 of 1, from 118 to 224: score 61.5, E = 2.5e-15
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                         + ++ W+n +la+ ++++         i+++ +d+  DG++L++
    KIAA1419   118    FDTQIYTDWANHYLAKSGHKR--------LIRDLQQDVT-DGVLLAQ 155  

                   LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD
                   ++ +++ ++i+ ++  +++r +++eN+  +l+++ ++G +  ++++ +e+
    KIAA1419   156 IIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKG-IN-IQGLSAEE 203  

                   ivegnpdPDeklvltllwqLirrfq<-*
                   i +gn     k +l+l  +L r+ q   
    KIAA1419   204 IRNGNL----KAILGLFFSLSRYKQ    224  

PF00307.21.fs: domain 1 of 1, from 121 to 224: score 62.2, E = 5.1e-16
                   *->kellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLcaLln
                      + ++ W+n +la+ ++++         i+++ +d+  DG++L++++ 
    KIAA1419   121    QIYTDWANHYLAKSGHKR--------LIRDLQQDVT-DGVLLAQIIQ 158  

                   klrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDive
                   +++ ++i+ ++  +++r +++eN+  +l+++ ++G +  ++++ +e+i +
    KIAA1419   159 VVANEKIEDINGCPKNRSQMIENIDACLNFLAAKG-IN-IQGLSAEEIRN 206  

                   gnpdPDeklvltllwqLirrfq<-*
                   gn     k +l+l  +L r+ q   
    KIAA1419   207 GNL----KAILGLFFSLSRYKQ    224  

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