hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02170078/chunk_1/iprscan-20080502-02170078.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1417
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00225                                                 114.9    9.1e-30   2
SM00248                                                  46.5    3.6e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/2      77   106 ..     1    30 []    20.2     0.29
SM00248    2/2     111   140 ..     1    30 []    26.3   0.0043
SM00225    1/2     590   770 ..     1   114 []    48.4  9.1e-10
SM00225    2/2     794   897 ..     1   114 []    66.4  3.5e-15

Alignments of top-scoring domains:
SM00248: domain 1 of 2, from 77 to 106: score 20.2, E = 0.29
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       Gr++LHl  + g + v+  L++kg+d+ +   
    KIAA1417    77    FGRNALHLVSSCGKKGVLDWLIQKGVDLLV    106  

SM00248: domain 2 of 2, from 111 to 140: score 26.3, E = 0.0043
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH  + +g++++v  Ll++g+++++   
    KIAA1417   111    SGWTALHRSIFYGHIDCVWSLLKHGVSLYI    140  

SM00225: domain 1 of 2, from 590 to 770: score 48.4, E = 9.1e-10
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +Dvt++vg+         + f+a  Hk++La +   S++F++lf+s+
    KIAA1417   590    HDVTFQVGN---------RLFPA--HKYILAVH---SDFFQKLFLSd 622  

                   .....................ieldDeallievspeaFralLnflYt.kl
                   +++++ ++  ++++++ + +   ++       v+p+ F+ lL+f+Yt++ 
    KIAA1417   623 gntseftdiyqkdedsagchlFVVEK------VHPDMFEYLLQFIYTdTC 666  

                   dlpeed............................................
                   d+   + +++ + ++++++ +++ +++ ++ + ++++++++  +  ++++
    KIAA1417   667 DFLTHGfkprihlnknpeeyqgtlnshlnkvnfheddnqksafevyksnq 716  

                   .......................venveelLelAdfldSYGqip.lvelC
                    ++ ++++++++++ +++++ ++ + v +l   A+++    +  +l    
    KIAA1417   717 aqtvserqkskpksckkgknireDDPVRMLQTVAKKF----DFSnLSSRL 762  

                   eefllknl<-*
                        +n+   
    KIAA1417   763 DGVRFENE    770  

SM00225: domain 2 of 2, from 794 to 897: score 66.4, E = 3.5e-15
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt    +        gk+f++  Hk+vL+a+    +yF+++++s+
    KIAA1417   794    CDVTMKSVD--------GKEFPC--HKCVLCAR---LEYFHSMLSSs 827  

                   .........ieldDeallievspeaFralLnflYt..kldlpeed.venv
                     + ++    e++       ++ ++++ +L++lYt++ + ++e+ +v+ +
    KIAA1417   828 wieasscaaLEMP-------IHSDILKVILDYLYTdeAVVIKESQnVDFI 870  

                   eelLelAdfldSYGqip.lvelCeefllknl<-*
                    ++L  Ad l     i++l+e Ce +l ++l   
    KIAA1417   871 CSVLVVADQL----LITrLKEICEVALTEKL    897  

//