hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02170078/chunk_1/iprscan-20080502-02170078.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1417 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00651.21.fs BTB/POZ domain 112.9 5.2e-31 2 PF00651.21.ls BTB/POZ domain 98.2 2.3e-26 2 PF00023.20.ls Ankyrin repeat 59.1 1.3e-14 2 PF00023.20.fs Ankyrin repeat 55.2 2.1e-14 2 PF00415.9.fs Regulator of chromosome condensation (RCC1) 42.0 1.8e-11 3 PF00415.9.ls Regulator of chromosome condensation (RCC1) 40.5 5.4e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/2 77 109 .. 1 33 [] 24.0 1.1e-05 PF00023.20.ls 1/2 77 109 .. 1 33 [] 26.0 0.00013 PF00023.20.ls 2/2 111 143 .. 1 33 [] 33.2 8.5e-07 PF00023.20.fs 2/2 111 143 .. 1 33 [] 31.2 1e-07 PF00415.9.ls 1/2 221 270 .. 1 68 [] 19.1 0.0055 PF00415.9.ls 2/2 273 325 .. 1 68 [] 21.3 0.0032 PF00415.9.fs 3/3 273 325 .. 1 68 [] 19.6 5.2e-05 PF00651.21.fs 1/2 580 668 .. 1 91 [. 52.5 3.8e-14 PF00651.21.ls 1/2 580 714 .. 1 135 [] 35.9 1.3e-07 PF00651.21.ls 2/2 783 897 .. 1 135 [] 62.3 1.5e-15 PF00651.21.fs 2/2 783 897 .. 1 135 [] 60.5 2.2e-16 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 2, from 77 to 109: score 24.0, E = 1.1e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ +LHl +++g + v+ +L+++G dl ++d+ KIAA1417 77 FGRNALHLVSSCGKKGVLDWLIQKGVDLLVKDK 109 PF00023.20.ls: domain 1 of 2, from 77 to 109: score 26.0, E = 0.00013 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ +LHl +++g + v+ +L+++G dl ++d+ KIAA1417 77 FGRNALHLVSSCGKKGVLDWLIQKGVDLLVKDK 109 PF00023.20.ls: domain 2 of 2, from 111 to 143: score 33.2, E = 8.5e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH +++g++++v Ll++G +l +qd+ KIAA1417 111 SGWTALHRSIFYGHIDCVWSLLKHGVSLYIQDK 143 PF00023.20.fs: domain 2 of 2, from 111 to 143: score 31.2, E = 1e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH +++g++++v Ll++G +l +qd+ KIAA1417 111 SGWTALHRSIFYGHIDCVWSLLKHGVSLYIQDK 143 PF00415.9.ls: domain 1 of 2, from 221 to 270: score 19.1, E = 0.0055 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G+VY+ G g G+LG g e + vP lv KIAA1417 221 KGQVYTCGH--GPGGRLGHGDEQTCL-----------VPRLV----- 249 ssslsekVvsvasGgqHtval<-* + ++va+ +Htv+l KIAA1417 250 EGLNGHNCSQVAAAKDHTVVL 270 PF00415.9.ls: domain 2 of 2, from 273 to 325: score 21.3, E = 0.0032 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG VY++G+ + +qLG ++ + vP ++ KIAA1417 273 DGCVYTFGL--NIFHQLGIIPPPSSCN----------VPRQI---QA 304 ssslsekVvsvasGgqHtval<-* + + va+G Htv+ KIAA1417 305 KYLKGRTIIGVAAGRFHTVLW 325 PF00415.9.fs: domain 3 of 3, from 273 to 325: score 19.6, E = 5.2e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG VY++G+ + +qLG ++ + vP ++ KIAA1417 273 DGCVYTFGL--NIFHQLGIIPPPSSCN----------VPRQI---QA 304 ssslsekVvsvasGgqHtval<-* + + va+G Htv+ KIAA1417 305 KYLKGRTIIGVAAGRFHTVLW 325 PF00651.21.fs: domain 1 of 2, from 580 to 668: score 52.5, E = 3.8e-14 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l e + ++ DVt++vg ++ f+AHK +La +S++F++l KIAA1417 580 LREADEMDSIHDVTFQVG--------NRLFPAHKYILAVHSDFFQKL 618 Ftgqfke...s.iteeessvs..seieledvspedfealLefiYtgelsi F+++++ ++ ++i+ ++ ++ + e v p+ fe lL+fiYt++ ++ KIAA1417 619 FLSDGNTsefTdIYQKDEDSAgcHLFVVEKVHPDMFEYLLQFIYTDTCDF 668 <-* KIAA1417 - - PF00651.21.ls: domain 1 of 2, from 580 to 714: score 35.9, E = 1.3e-07 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l e + ++ DVt++vg ++ f+AHK +La +S++F++l KIAA1417 580 LREADEMDSIHDVTFQVG--------NRLFPAHKYILAVHSDFFQKL 618 Ftgqfke...s.iteeessvs..seieledvspedfealLefiYtgelsi F+++++ ++ ++i+ ++ ++ + e v p+ fe lL+fiYt++ ++ KIAA1417 619 FLSDGNTsefTdIYQKDEDSAgcHLFVVEKVHPDMFEYLLQFIYTDTCDF 668 tqdqksPs.sc.kseenvedlLaaAadllqipslvdaCeefliksl<-* + P +k++e + L +++ + ++ f ++++ KIAA1417 669 LTHGFKPRiHLnKNPEEYQGTLNSHLNKVNFHEDDNQKSAFEVYKS 714 PF00651.21.ls: domain 2 of 2, from 783 to 897: score 62.3, E = 1.5e-15 *->lnelrkqg.elcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFka l+ + k+ ++lcDVt + d gk+f++HK+vL+a+ +YF++ KIAA1417 783 LKLSQKKCsFLCDVTMKSVD-------GKEFPCHKCVLCARLEYFHS 822 lFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqk ++++ + +e ss +e + ++++ +L+++Yt+e+ + KIAA1417 823 MLSSSW-----IEASSCA-ALE-MPIHSDILKVILDYLYTDEAVVI---- 861 sPssckseenve...dlLaaAadllqipslvdaCeefliksl<-* k+ +nv+ ++L A d l i +l+++Ce l ++l KIAA1417 862 -----KESQNVDficSVLVVA-DQLLITRLKEICEVALTEKL 897 PF00651.21.fs: domain 2 of 2, from 783 to 897: score 60.5, E = 2.2e-16 *->lnelrkqg.elcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFka l+ + k+ ++lcDVt + d gk+f++HK+vL+a+ +YF++ KIAA1417 783 LKLSQKKCsFLCDVTMKSVD-------GKEFPCHKCVLCARLEYFHS 822 lFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqk ++++ + +e ss +e + ++++ +L+++Yt+e+ + KIAA1417 823 MLSSSW-----IEASSCA-ALE-MPIHSDILKVILDYLYTDEAVVI---- 861 sPssckseenve...dlLaaAadllqipslvdaCeefliksl<-* k+ +nv+ ++L A d l i +l+++Ce l ++l KIAA1417 862 -----KESQNVDficSVLVVA-DQLLITRLKEICEVALTEKL 897 //