hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02152244/chunk_1/iprscan-20080502-02152244.nocrc
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Query sequence: KIAA1416
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00592                                                 187.1    1.7e-51   2
SM00487                                                 141.2    1.1e-37   1
SM00490                                                  93.9    1.9e-23   1
SM00298                                                  82.5    5.2e-20   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00298      1/2      37   102 ..     1    63 []    46.0    5e-09
SM00298      2/2     118   175 ..     1    63 []    36.5  3.6e-06
SM00487      1/1     202   403 ..     1   219 []   141.2  1.1e-37
SM00490      1/1     558   642 ..     1    86 []    93.9  1.9e-23
SM00592      1/2    1802  1851 ..     1    50 []    94.1  1.7e-23
SM00592      2/2    1880  1924 ..     1    50 []    93.0  3.5e-23

Alignments of top-scoring domains:
SM00298: domain 1 of 2, from 37 to 102: score 46.0, E = 5e-09
                   *->eyeivEkIldhrw.......ekkkgeveYLVKWkGysysedtWEpee
                        + vEkI  +r  ++++++ ++   +e++VK+k++sy ++ W + e
    KIAA1416    37    GPV-VEKIMSSRSvkkqkesGEEVEIEEFYVKYKNFSYLHCQWASIE 82   

                   nleemLkkkncekkldeykkrek<-*
                   +le   k+k+ ++k++++k ++    
    KIAA1416    83 DLE---KDKRIQQKIKRFKAKQG    102  

SM00298: domain 2 of 2, from 118 to 175: score 36.5, E = 3.6e-06
                   *->eyeivEkIldhrw...ekkkgeveYLVKWkGysysedtWEpeenlee
                      +y++v++I d  ++++ +++ +++YLVKW  ++y++ tWE ++++  
    KIAA1416   118    DYVEVDRIMDFARstdDRGEPVTHYLVKWCSLPYEDSTWERRQDI-- 162  

                   mLkkkncekkldeykkrek<-*
                         ++ k++e++k  +   
    KIAA1416   163 ------DQAKIEEFEKLMS    175  

SM00487: domain 1 of 1, from 202 to 403: score 141.2, E = 1.1e-37
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      +++klr+yQ+e+++wll +  + r++ila+++G+GKT++ + +l e 
    KIAA1416   202    NNnKLREYQLEGVNWLLFNwynmRNCILADEMGLGKTIQSITFLYEI 248  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                    +kg         ++++Lv++P  + + +w++e++ +             
    KIAA1416   249 YLKG--------IHGPFLVIAP-LSTIPNWEREFRTWT----------EL 279  

                   vvglygG.sktke.keqlrklksgkt...........dilvtTpgrLldl
                   +v++y+G++  +++  ql ++  ++++++  +++ + + ++tT +++l +
    KIAA1416   280 NVVVYHGsQA-SRrTIQLYEMYFKDPqgrvikgsykfHAIITTFEMILTD 328  

                   l.ngkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrq
                    ++   l+   +++v++DEaHrl+        ++ ++l++ lk +    +
    KIAA1416   329 CpE---LRNiPWRCVVIDEAHRLK--------NRNCKLLeGLKMM-DLEH 366  

                   rlllSATppeienllklflnlpelfpnpvfisvgf..tlepieqf<-*
                   ++ll++Tp  ++n+ +++++      +++f+ +++ ++   + q+   
    KIAA1416   367 KVLLTGTP--LQNTVEELFS------LLHFLEPSRfpSETTFMQE    403  

SM00490: domain 1 of 1, from 558 to 642: score 93.9, E = 1.9e-23
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d+l+++L ++     +++ r++G+   + R++++++F k ++++ ++
    KIAA1416   558    DILEDYLIQR----RYPYERIDGRVRGNLRQAAIDRFSKPDSdrfVF 600  

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   L++T+++++G++++++d+ I++d +w+p++++Q+  R++R+G   
    KIAA1416   601 LLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG    642  

SM00592: domain 1 of 2, from 1802 to 1851: score 94.1, E = 1.7e-23
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                      d+++R+pVin+e+G++L+G+dAPk+kdL +WL+ +P+y+vD++ ++P
    KIAA1416  1802    DPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTVDMPSYVP 1848 

                   rsa<-*
                   ++a   
    KIAA1416  1849 KNA    1851 

SM00592: domain 2 of 2, from 1880 to 1924: score 93.0, E = 3.5e-23
                   *->dgeeRVpVinketGkkLtGddAPkakdLerWLeenPeyvvDlgevaP
                      +geeRVpV+nk++Gkk++G++AP++kdL rWLeenPe+     +vaP
    KIAA1416  1880    TGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEF-----AVAP 1921 

                   rsa<-*
                   +++   
    KIAA1416  1922 DWT    1924 

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