hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02152244/chunk_1/iprscan-20080502-02152244.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1416 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 352.2 8e-103 1 PF00176.13.fs SNF2 family N-terminal domain 350.4 2.8e-102 1 PF07533.6.ls Associated with TFs and helicases 183.5 4.7e-52 2 PF07533.6.fs Associated with TFs and helicases 179.6 3.9e-51 2 PF00385.14.ls 'chromo' (CHRromatin Organisation MOdifier 112.5 1.1e-30 2 PF00385.14.fs 'chromo' (CHRromatin Organisation MOdifier 108.8 1.5e-29 2 PF00271.21.fs Helicase conserved C-terminal domain 89.9 1.3e-25 1 PF00271.21.ls Helicase conserved C-terminal domain 91.9 1.8e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00385.14.fs 1/2 38 100 .. 1 68 [] 49.8 8.4e-13 PF00385.14.ls 1/2 38 100 .. 1 68 [] 51.7 2.3e-12 PF00385.14.ls 2/2 120 173 .. 1 68 [] 60.8 4.1e-15 PF00385.14.fs 2/2 120 173 .. 1 68 [] 59.0 2.4e-15 PF00176.13.fs 1/1 209 496 .. 1 355 [] 350.4 2.8e-102 PF00176.13.ls 1/1 209 496 .. 1 355 [] 352.2 8e-103 PF00271.21.ls 1/1 563 642 .. 1 76 [] 91.9 1.8e-24 PF00271.21.fs 1/1 563 642 .. 1 76 [] 89.9 1.3e-25 PF07533.6.ls 1/2 1802 1851 .. 1 49 [] 89.8 7.7e-24 PF07533.6.fs 1/2 1802 1851 .. 1 49 [] 87.8 1.5e-24 PF07533.6.ls 2/2 1880 1924 .. 1 49 [] 93.7 5.1e-25 PF07533.6.fs 2/2 1880 1924 .. 1 49 [] 91.8 1.1e-25 Alignments of top-scoring domains: PF00385.14.fs: domain 1 of 2, from 38 to 100: score 49.8, E = 8.4e-13 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp ++VE+I+ +r +k++k+s++ +++++e++VK+k+++y ++ W + KIAA1416 38 PVVEKIMSSRSVKKQKESGE----EVEIEEFYVKYKNFSYLHCQWAS 80 eenLkack.gfpelkieefeqr<-* +e+L+++k++ ++ i++f+ + KIAA1416 81 IEDLEKDKrIQQK--IKRFKAK 100 PF00385.14.ls: domain 1 of 2, from 38 to 100: score 51.7, E = 2.3e-12 *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp ++VE+I+ +r +k++k+s++ +++++e++VK+k+++y ++ W + KIAA1416 38 PVVEKIMSSRSVKKQKESGE----EVEIEEFYVKYKNFSYLHCQWAS 80 eenLkack.gfpelkieefeqr<-* +e+L+++k++ ++ i++f+ + KIAA1416 81 IEDLEKDKrIQQK--IKRFKAK 100 PF00385.14.ls: domain 2 of 2, from 120 to 173: score 60.8, E = 4.1e-15 *->yeVErILdhr.lrkggkksvplpekpitgleYLVKWkGypyeenTWE eV+rI+d + +++++ v +YLVKW+ +pye++TWE KIAA1416 120 VEVDRIMDFArSTDDRGEPVT---------HYLVKWCSLPYEDSTWE 157 peenLkackgfpelkieefeqr<-* ++++++ kieefe+ KIAA1416 158 RRQDIDQA------KIEEFEKL 173 PF00385.14.fs: domain 2 of 2, from 120 to 173: score 59.0, E = 2.4e-15 *->yeVErILdhr.lrkggkksvplpekpitgleYLVKWkGypyeenTWE eV+rI+d + +++++ v +YLVKW+ +pye++TWE KIAA1416 120 VEVDRIMDFArSTDDRGEPVT---------HYLVKWCSLPYEDSTWE 157 peenLkackgfpelkieefeqr<-* ++++++ kieefe+ KIAA1416 158 RRQDIDQA------KIEEFEKL 173 PF00176.13.fs: domain 1 of 1, from 209 to 496: score 350.4, E = 2.8e-102 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleGvnWL + + n ++++ILADEMGLGKT+Q+I +l KIAA1416 209 YQLEGVNWLLFNWYN--------MRNCILADEMGLGKTIQSITFLYE 247 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns ++ + gpfLv++PlSt++nW++Ef +w+ ln+vvy+g++ s KIAA1416 248 IYLKGI-H----GPFLVIAPLSTIPNWEREFRTWTE--LNVVVYHGSQAS 290 rdqdrkdellrnvlkdggr.l....kfdvlitsYeiirkNkLlkdkdeLk r ++ ++e ++ +++gr ++++ kf+ +it++e+i+ d eL KIAA1416 291 RRTIQLYEM--YFKDPQGRvIkgsyKFHAIITTFEMILT-----DCPELR 333 klfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQN + i wr v++DE+ Hr+KN+++kl ++ lk +++lLTGTPlQN KIAA1416 334 N--IPWRCVVIDEA-HRLKNRNCKL--LEGLKMMD-LEHKVLLTGTPLQN 377 nLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLada ++El+sLl+Fl P++F s +F+++f + +e+ KIAA1416 378 TVEELFSLLHFLEPSRFPSE-------TTFMQEFGDLKTEE--------- 411 tefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvl +++ L+ ilkp +LRRlK+dvek+L p K e+++ KIAA1416 412 ---------------QVQKLQAILKPMMLRRLKEDVEKNLAP--KEETII 444 fcelsklQkelYkkflkeeskdvkaindserreggkeknegksrllnlim ++el+ +Qk++Y+ +l +k++ ++ ++ g + +lln +m KIAA1416 445 EVELTNIQKKYYRAIL---EKNFTFLSKGG---GQAN----VPNLLNTMM 484 qLrKicNfHPyLf<-* +LrK+cN HPyL+ KIAA1416 485 ELRKCCN-HPYLI 496 PF00176.13.ls: domain 1 of 1, from 209 to 496: score 352.2, E = 8e-103 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleGvnWL + + n ++++ILADEMGLGKT+Q+I +l KIAA1416 209 YQLEGVNWLLFNWYN--------MRNCILADEMGLGKTIQSITFLYE 247 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns ++ + gpfLv++PlSt++nW++Ef +w+ ln+vvy+g++ s KIAA1416 248 IYLKGI-H----GPFLVIAPLSTIPNWEREFRTWTE--LNVVVYHGSQAS 290 rdqdrkdellrnvlkdggr.l....kfdvlitsYeiirkNkLlkdkdeLk r ++ ++e ++ +++gr ++++ kf+ +it++e+i+ d eL KIAA1416 291 RRTIQLYEM--YFKDPQGRvIkgsyKFHAIITTFEMILT-----DCPELR 333 klfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQN + i wr v++DE+ Hr+KN+++kl ++ lk +++lLTGTPlQN KIAA1416 334 N--IPWRCVVIDEA-HRLKNRNCKL--LEGLKMMD-LEHKVLLTGTPLQN 377 nLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLada ++El+sLl+Fl P++F s +F+++f + +e+ KIAA1416 378 TVEELFSLLHFLEPSRFPSE-------TTFMQEFGDLKTEE--------- 411 tefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvl +++ L+ ilkp +LRRlK+dvek+L p K e+++ KIAA1416 412 ---------------QVQKLQAILKPMMLRRLKEDVEKNLAP--KEETII 444 fcelsklQkelYkkflkeeskdvkaindserreggkeknegksrllnlim ++el+ +Qk++Y+ +l +k++ ++ ++ g + +lln +m KIAA1416 445 EVELTNIQKKYYRAIL---EKNFTFLSKGG---GQAN----VPNLLNTMM 484 qLrKicNfHPyLf<-* +LrK+cN HPyL+ KIAA1416 485 ELRKCCN-HPYLI 496 PF00271.21.ls: domain 1 of 1, from 563 to 642: score 91.9, E = 1.8e-24 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l ++ +++ r++G+ + R++++++F + +s++ ++L++T+++g+ KIAA1416 563 YLiQRRYPYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 609 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi+++++++ I++d++wnp++++Q+ R++R+G KIAA1416 610 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 642 PF00271.21.fs: domain 1 of 1, from 563 to 642: score 89.9, E = 1.3e-25 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l ++ +++ r++G+ + R++++++F + +s++ ++L++T+++g+ KIAA1416 563 YLiQRRYPYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 609 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi+++++++ I++d++wnp++++Q+ R++R+G KIAA1416 610 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 642 PF07533.6.ls: domain 1 of 2, from 1802 to 1851: score 89.8, E = 7.7e-24 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgy.VDlgevaP d+++R+pVin+++G+rL+G+dAPk+kdL WL+++P+y+VD++ ++P KIAA1416 1802 DPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYtVDMPSYVP 1848 rst<-* +++ KIAA1416 1849 KNA 1851 PF07533.6.fs: domain 1 of 2, from 1802 to 1851: score 87.8, E = 1.5e-24 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgy.VDlgevaP d+++R+pVin+++G+rL+G+dAPk+kdL WL+++P+y+VD++ ++P KIAA1416 1802 DPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYtVDMPSYVP 1848 rst<-* +++ KIAA1416 1849 KNA 1851 PF07533.6.ls: domain 2 of 2, from 1880 to 1924: score 93.7, E = 5.1e-25 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr +geeRVpV+n+++Gk+++G++AP++kdL rWLeenP++ +vaP+ KIAA1416 1880 TGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEF----AVAPD 1922 st<-* +t KIAA1416 1923 WT 1924 PF07533.6.fs: domain 2 of 2, from 1880 to 1924: score 91.8, E = 1.1e-25 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr +geeRVpV+n+++Gk+++G++AP++kdL rWLeenP++ +vaP+ KIAA1416 1880 TGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEF----AVAPD 1922 st<-* +t KIAA1416 1923 WT 1924 //