hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02102471/chunk_1/iprscan-20080502-02102471.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1413
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01713.11.fs Smr domain                                     108.0    1.1e-37   1
PF01713.11.ls Smr domain                                     109.9    6.9e-30   1
PF08590.1.fs Domain of unknown function (DUF1771)            95.6    1.1e-26   1
PF08590.1.ls Domain of unknown function (DUF1771)            97.6    3.4e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08590.1.fs   1/1    1247  1312 ..     1    66 []    95.6  1.1e-26
PF08590.1.ls   1/1    1247  1312 ..     1    66 []    97.6  3.4e-26
PF01713.11.fs   1/1    1320  1399 .]     1    89 []   108.0  1.1e-37
PF01713.11.ls   1/1    1320  1399 .]     1    89 []   109.9  6.9e-30

Alignments of top-scoring domains:
PF08590.1.fs: domain 1 of 1, from 1247 to 1312: score 95.6, E = 1.1e-26
                   *->eYerlRaeArkhgkkRnelfqkAaeAYkrGDgaaAkeLSeeGKkhge
                      +Y+++RaeA  h +kR+e++ kA+eAY+ G++ +A ++ ++G  h +
    KIAA1413  1247    DYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQ 1293 

                   kaeeaNrqAAeaIfrenNa<-*
                   k++eaN+ AA +If+  Na   
    KIAA1413  1294 KMKEANHLAAIEIFEKVNA    1312 

PF08590.1.ls: domain 1 of 1, from 1247 to 1312: score 97.6, E = 3.4e-26
                   *->eYerlRaeArkhgkkRnelfqkAaeAYkrGDgaaAkeLSeeGKkhge
                      +Y+++RaeA  h +kR+e++ kA+eAY+ G++ +A ++ ++G  h +
    KIAA1413  1247    DYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQ 1293 

                   kaeeaNrqAAeaIfrenNa<-*
                   k++eaN+ AA +If+  Na   
    KIAA1413  1294 KMKEANHLAAIEIFEKVNA    1312 

PF01713.11.fs: domain 1 of 1, from 1320 to 1399: score 108.0, E = 1.1e-37
                   *->LDLHGltveEAlseLdkfidqallalkatngircvlIIHGkGnhssg
                      LDLHGl+v+EAl++L++ ++  ++++k+++g +++++I+G+Gnhs+g
    KIAA1413  1320    LDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQG 1366 

                   gtgvLkpaVpewLkqpfhphVksyheappneGGsGatvVlLk<-*
                   g++++kpaV ++L      h  +++e+     ++G++ V+Lk   
    KIAA1413  1367 GVARIKPAVIKYLIS----HSFRFSEI-----KPGCLKVMLK    1399 

PF01713.11.ls: domain 1 of 1, from 1320 to 1399: score 109.9, E = 6.9e-30
                   *->LDLHGltveEAlseLdkfidqallalkatngircvlIIHGkGnhssg
                      LDLHGl+v+EAl++L++ ++  ++++k+++g +++++I+G+Gnhs+g
    KIAA1413  1320    LDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQG 1366 

                   gtgvLkpaVpewLkqpfhphVksyheappneGGsGatvVlLk<-*
                   g++++kpaV ++L      h  +++e+     ++G++ V+Lk   
    KIAA1413  1367 GVARIKPAVIKYLIS----HSFRFSEI-----KPGCLKVMLK    1399 

//