hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01560359/chunk_1/iprscan-20080502-01560359.nocrc
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Query sequence: KIAA1406
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00182                                                  41.0    5.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00182    1/1     249   397 ..     1   159 []    41.0  5.8e-09

Alignments of top-scoring domains:
SM00182: domain 1 of 1, from 249 to 397: score 41.0, E = 5.8e-09
                   *->dkvlvlFkYiedKDVFekyYkkhLAKRLllnrSaSdDaEenmitkLK
                      d + +l++ + +KD+F ++Y+ +LA RLl++ S S++ E + ++ LK
    KIAA1406   249    DIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLK 295  

                   qecGyPaefTsKLegMFrDislSkdltqsFkdylannpgnaskksiDlsn
                    ++G      + +e+M++D+  S+ ++   ++  +  p   +++ ++++ 
    KIAA1406   296 LRFGE--APMHFCEVMLKDMADSRRINANIREEDEKRP---AEEQPPFGV 340  

                   .vrVLtsgyWPtystekikveinLPqeLskaleeFeeFYlakhsGRkLtW
                    + +L+s++WP ++     ++   P++ ++ale + + Y++ +  R L+W
    KIAA1406   341 yAVILSSEFWPPFKD----EKLEVPEDIRAALEAYCKKYEQLKAMRTLSW 386  

                   lhslgsgevkanf<-*
                    h lg   v++++   
    KIAA1406   387 KHTLG--LVTMDV    397  

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