# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg03519s1.fasta.huge -Q ../query/KIAA1406.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1406, 571 aa vs ./tmplib.24314 library 1986934 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.8858+/-0.00491; mu= 14.8720+/- 0.336 mean_var=84.4593+/-19.652, 0's: 0 Z-trim: 4 B-trim: 3 in 1/39 Lambda= 0.139557 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0695 ( 781 res) hk04006s1 ( 781) 229 56.2 1.1e-08 KIAA0617 ( 786 res) hg03834 ( 786) 137 37.6 0.0043 >>KIAA0695 ( 781 res) hk04006s1 (781 aa) initn: 217 init1: 155 opt: 229 Z-score: 247.6 bits: 56.2 E(): 1.1e-08 Smith-Waterman score: 229; 28.037% identity (56.075% similar) in 214 aa overlap (250-460:458-667) 220 230 240 250 260 270 KIAA14 EDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQ :. .. ::: ::.: :.. :: ::: KIAA06 AELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYG-KDVFEAFYKKDLAKRLLVG 430 440 450 460 470 480 280 290 300 310 320 330 KIAA14 FSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFG : : . : . :: . : : : :.::: :. : .... ... . . . KIAA06 KSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQNVPGNIELT 490 500 510 520 530 540 340 350 360 370 380 390 KIAA14 VYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVEL : ::. .:: . ....: .. : . : .. : :.:. ::: .. .:. KIAA06 VN--ILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEF 550 560 570 580 590 600 400 410 420 430 440 450 KIAA14 ADRTLSVAVTPVQAVILLYFQDQASWTLEELSKAVKMPVALLRRRMSVWLQQG---VLRE . . :. :...::.:.. ..:::...:. . . ::: .. : : :: . KIAA06 KEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQS-LACGKARVLAK 610 620 630 640 650 660 460 470 480 490 500 510 KIAA14 EPPGTFSVIEEERPQDRDNMVLIDSDDESDSGMASQADQKEEELLLFWTYIQAMLTNLES .: : KIAA06 NPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIV 670 680 690 700 710 720 >>KIAA0617 ( 786 res) hg03834 (786 aa) initn: 108 init1: 82 opt: 137 Z-score: 147.4 bits: 37.6 E(): 0.0043 Smith-Waterman score: 157; 24.686% identity (48.117% similar) in 239 aa overlap (249-458:431-666) 220 230 240 250 260 270 KIAA14 SEDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLH : .: .. ::.: :.. :: ::: KIAA06 RSPEYLSLFIDDKLKKGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLT 410 420 430 440 450 460 280 290 300 310 320 330 KIAA14 QFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPF . : : . : . :: . : : :..::. : :... : .. : KIAA06 NKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSIS---NTTMDEFRQHLQATGVSLG 470 480 490 500 510 340 350 360 370 380 390 KIAA14 GVYAVI--LSSEFWPPFK-DEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTM :: .. :.. .:: . : ..: : :.: . . : .. : :. .: .: . . KIAA06 GVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADL 520 530 540 550 560 570 400 410 420 430 KIAA14 D------VELAD----------------RTLSVAVTPVQAVILLYFQDQASWTLEELSKA . :. : : . :. : .::. :... ..:.::... KIAA06 NATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQE 580 590 600 610 620 630 440 450 460 470 480 KIAA14 VKMPVALLRRRMSVWL----QQGVLREEPPGTFSVIEEERPQDRDNMVLIDSDDESDSGM . .: : : .. : :: .:: KIAA06 TDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAA 640 650 660 670 680 690 571 residues in 1 query sequences 1986934 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:21:02 2008 done: Thu Dec 18 15:21:03 2008 Total Scan time: 0.500 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]