hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01473308/chunk_1/iprscan-20080502-01473308.nocrc
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Query sequence: KIAA1401
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04950.3.ls Protein of unknown function (DUF663)           653.0   2.2e-193   1
PF04950.3.fs Protein of unknown function (DUF663)           651.1   8.2e-193   1
PF08142.2.fs AARP2CN (NUC121) domain                        136.4    1.1e-38   2
PF08142.2.ls AARP2CN (NUC121) domain                        138.2    2.1e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08142.2.fs   1/2     277   358 ..     1    88 []   136.2  1.2e-38
PF08142.2.ls   1/1     277   358 ..     1    88 []   138.2  2.1e-38
PF04950.3.fs   1/1     535   822 ..     1   326 []   651.1 8.2e-193
PF04950.3.ls   1/1     535   822 ..     1   326 []   653.0 2.2e-193

Alignments of top-scoring domains:
PF08142.2.fs: domain 1 of 2, from 277 to 358: score 136.2, E = 1.2e-38
                   *->EilNLlRfisvmKpRpltWRdsRpYlLaDrvedvtspeeieespkvg
                      E+ +LlR+++++K+++l +Rd+R+Yl+a+ v++v+s    ee+ +vg
    KIAA1401   277    EAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPS----EENNLVG 319  

                   rlvavyKGyVRGtgLnvnrlVHIpGvGDFqiskiealpDPc<-*
                   +l+ ++ GyVRG+ Lnvnrl HI+G+GDFq+++i+a+ DP+   
    KIAA1401   320 TLK-IS-GYVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPF    358  

PF08142.2.ls: domain 1 of 1, from 277 to 358: score 138.2, E = 2.1e-38
                   *->EilNLlRfisvmKpRpltWRdsRpYlLaDrvedvtspeeieespkvg
                      E+ +LlR+++++K+++l +Rd+R+Yl+a+ v++v+s    ee+ +vg
    KIAA1401   277    EAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPS----EENNLVG 319  

                   rlvavyKGyVRGtgLnvnrlVHIpGvGDFqiskiealpDPc<-*
                   +l+ ++ GyVRG+ Lnvnrl HI+G+GDFq+++i+a+ DP+   
    KIAA1401   320 TLK-IS-GYVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPF    358  

PF04950.3.fs: domain 1 of 1, from 535 to 822: score 651.1, E = 8.2e-193
                   *->DEvelppdvparerfaKYrGLkSfrtSpWDpnElkDpnlPndyarif
                      DEv++p+dv+ar+rf+KYrGLkSfrtSpWDp+E    nlP+dyarif
    KIAA1401   535    DEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKE----NLPQDYARIF 577  

                   qfqNykntKkrilnekyiFREtekldveeekriegvkpGsyVrleiknVP
                   qfqN++nt+k+i++e            +eek++eg+++G+yV+l++++VP
    KIAA1401   578 QFQNFTNTRKSIFKE------------VEEKEVEGAEVGWYVTLHVSEVP 615  

                   kelaenfnsvnpkqmpiFivfgLLphEeKmsvvnfkikkhrwykkplkSk
                   ++++e+f++   ++ p+ i+f+LLphE+Kmsv+n+++++++++++p+k+k
    KIAA1401   616 VSVVECFRQ---GT-PL-IAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAK 660  

                   epLiiqvGfRRFqanPiySqPgsntsndkhKyeRYlpphktcvATfYGPi
                   e+Li+++GfRRF+a+P++Sq   +t++dkhK++R+l++++++vAT+Y+Pi
    KIAA1401   661 EELIFHCGFRRFRASPLFSQ---HTAADKHKLQRFLTADMALVATVYAPI 707  

                   tfpnspvlafkkvkssdsEnfrqngfrlaAtGsilevdpnriIlKklvLt
                   tfp+++vl+fk+ ks+++       ++l+AtG++++vdp+r+++K++vL+
    KIAA1401   708 TFPPASVLLFKQ-KSNGM-------HSLIATGHLMSVDPDRMVIKRVVLS 749  

                   GhPyKIfKktafvRyMFfnreDVewFkCCvqpvplfTksGrrGhIKeals
                   GhP+KIf+k+a+vRyMFfnreDV wFk    pv+l+Tk+G+rGhIKe+l 
    KIAA1401   750 GHPFKIFTKMAVVRYMFFNREDVLWFK----PVELRTKWGWRGHIKEPL- 794  

                   gthFGyfKAtFdgkinmqDiVimsLYkRV<-*
                   gth G++K++Fdgk+++qD+V+m+LYkRV   
    KIAA1401   795 GTH-GHMKCSFDGKLKSQDTVLMNLYKRV    822  

PF04950.3.ls: domain 1 of 1, from 535 to 822: score 653.0, E = 2.2e-193
                   *->DEvelppdvparerfaKYrGLkSfrtSpWDpnElkDpnlPndyarif
                      DEv++p+dv+ar+rf+KYrGLkSfrtSpWDp+E    nlP+dyarif
    KIAA1401   535    DEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKE----NLPQDYARIF 577  

                   qfqNykntKkrilnekyiFREtekldveeekriegvkpGsyVrleiknVP
                   qfqN++nt+k+i++e            +eek++eg+++G+yV+l++++VP
    KIAA1401   578 QFQNFTNTRKSIFKE------------VEEKEVEGAEVGWYVTLHVSEVP 615  

                   kelaenfnsvnpkqmpiFivfgLLphEeKmsvvnfkikkhrwykkplkSk
                   ++++e+f++   ++ p+ i+f+LLphE+Kmsv+n+++++++++++p+k+k
    KIAA1401   616 VSVVECFRQ---GT-PL-IAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAK 660  

                   epLiiqvGfRRFqanPiySqPgsntsndkhKyeRYlpphktcvATfYGPi
                   e+Li+++GfRRF+a+P++Sq   +t++dkhK++R+l++++++vAT+Y+Pi
    KIAA1401   661 EELIFHCGFRRFRASPLFSQ---HTAADKHKLQRFLTADMALVATVYAPI 707  

                   tfpnspvlafkkvkssdsEnfrqngfrlaAtGsilevdpnriIlKklvLt
                   tfp+++vl+fk+ ks+++       ++l+AtG++++vdp+r+++K++vL+
    KIAA1401   708 TFPPASVLLFKQ-KSNGM-------HSLIATGHLMSVDPDRMVIKRVVLS 749  

                   GhPyKIfKktafvRyMFfnreDVewFkCCvqpvplfTksGrrGhIKeals
                   GhP+KIf+k+a+vRyMFfnreDV wFk    pv+l+Tk+G+rGhIKe+l 
    KIAA1401   750 GHPFKIFTKMAVVRYMFFNREDVLWFK----PVELRTKWGWRGHIKEPL- 794  

                   gthFGyfKAtFdgkinmqDiVimsLYkRV<-*
                   gth G++K++Fdgk+++qD+V+m+LYkRV   
    KIAA1401   795 GTH-GHMKCSFDGKLKSQDTVLMNLYKRV    822  

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