# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09639.fasta.huge -Q ../query/KIAA1401.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1401, 853 aa
 vs ./tmplib.24314 library

1986652 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.1756+/-0.00626; mu= 10.8501+/- 0.425
 mean_var=145.4015+/-34.176, 0's: 0 Z-trim: 5  B-trim: 7 in 1/39
 Lambda= 0.106363

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0187  ( 1285 res)   ha02920                    (1285)  397 73.4 1.8e-13


>>KIAA0187  ( 1285 res)   ha02920                         (1285 aa)
 initn: 489 init1: 165 opt: 397  Z-score: 333.6  bits: 73.4 E(): 1.8e-13
Smith-Waterman score: 399;  22.840% identity (54.527% similar) in 486 aa overlap (381-830:639-1115)

              360       370       380       390       400       410
KIAA14 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
                                     : ..:.:. ::   . .  ..:. ...   
KIAA01 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
      610       620       630       640          650       660     

              420       430         440       450             460  
KIAA14 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
           :   :  .   . :. ::.... .  ..:.  :: . . :   :      ::    
KIAA01 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
             670       680       690       700       710       720 

               470       480       490                        500  
KIAA14 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
       .. :   ... :...   :. :  .: . ::              :.. ..  .    : 
KIAA01 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
             730       740       750       760       770       780 

            510       520       530       540        550       560 
KIAA14 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
       .. :. : .. .  ..:   . ..: .:.   .:.:  .. .:. . ..: : :: .  .
KIAA01 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
             790       800       810       820       830       840 

             570       580       590          600       610        
KIAA14 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
        .:  :.   :  .  ..:. ..  .. :.. ...   . :: . : :: ... .::   
KIAA01 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
             850        860       870       880       890       900

      620       630       640       650       660       670        
KIAA14 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
       :. :    :.:  .:   : ... ..: ...     . .:... .::  :.:::.. ::.
KIAA01 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
              910       920       930       940       950       960

      680       690       700       710       720          730     
KIAA14 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
         .    ...: ..    :   :. ..::: : .. .:  :. .:.     . ::: ...
KIAA01 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
              970       980       990       1000      1010         

         740       750       760       770       780       790     
KIAA14 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
       .: .  ..:.. :.: :.::: . . .. :: .  .:  :. . .::  : ::.::. : 
KIAA01 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
    1020      1030      1040      1050      1060      1070         

          800       810       820       830       840       850    
KIAA14 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME 
       . .: .. ::. ::  .: :.:  .  :     :.:                        
KIAA01 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
    1080      1090      1100      1110      1120      1130         

KIAA01 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
    1140      1150      1160      1170      1180      1190         




853 residues in 1 query   sequences
1986652 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:49 2008 done: Thu Dec 18 15:20:50 2008
 Total Scan time:  0.610 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]