hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01455523/chunk_1/iprscan-20080502-01455523.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1400 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 311.8 1.1e-90 5 PF00028.8.fs Cadherin domain 309.6 5.4e-90 7 PF08266.2.fs Cadherin-like 181.7 8.9e-53 2 PF08266.2.ls Cadherin-like 181.9 1.5e-51 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.fs 1/2 71 154 .. 1 84 [] 179.8 3.1e-52 PF08266.2.ls 1/1 71 154 .. 1 84 [] 181.9 1.5e-51 PF00028.8.fs 2/7 180 264 .. 1 95 [. 18.3 0.00013 PF00028.8.ls 1/5 180 294 .. 1 107 [] 19.6 0.0037 PF00028.8.fs 4/7 308 402 .. 1 107 [] 91.7 1.1e-25 PF00028.8.ls 2/5 308 402 .. 1 107 [] 93.6 5.6e-25 PF00028.8.ls 3/5 416 507 .. 1 107 [] 58.9 1.6e-14 PF00028.8.fs 5/7 420 507 .. 5 107 .] 58.6 3.4e-16 PF00028.8.fs 6/7 521 618 .. 1 107 [] 61.4 5.4e-17 PF00028.8.ls 4/5 521 618 .. 1 107 [] 63.3 7.4e-16 PF00028.8.ls 5/5 640 732 .. 1 107 [] 76.5 7.8e-20 PF00028.8.fs 7/7 647 732 .. 9 107 .] 75.2 5.9e-21 Alignments of top-scoring domains: PF08266.2.fs: domain 1 of 2, from 71 to 154: score 179.8, E = 3.1e-52 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF q++Y+V+EE e+G+fVGN+A DLGLd+++L+aRg++ v +++++y+ KIAA1400 71 SQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARGFQTVPNSRTPYL 117 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +lnletG+L+vnE+iDRE++C+qs++CvLhlev+lEn KIAA1400 118 DLNLETGVLYVNEKIDREQICKQSPSCVLHLEVFLEN 154 PF08266.2.ls: domain 1 of 1, from 71 to 154: score 181.9, E = 1.5e-51 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF q++Y+V+EE e+G+fVGN+A DLGLd+++L+aRg++ v +++++y+ KIAA1400 71 SQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARGFQTVPNSRTPYL 117 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +lnletG+L+vnE+iDRE++C+qs++CvLhlev+lEn KIAA1400 118 DLNLETGVLYVNEKIDREQICKQSPSCVLHLEVFLEN 154 PF00028.8.fs: domain 2 of 7, from 180 to 264: score 18.3, E = 0.00013 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++++E a +Gt+ A D+D g+N+ Y i++++ F+ KIAA1400 180 LTVEISESATPGTRFPLESAFDPD--VGTNSLRDYEITPNS---YFS 221 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d +t + ++ + kpLDRE++ ++ ++ A+D+ ggg KIAA1400 222 LDVQTQGDGNRfaeLVLEKPLDREQQ--AVHRYVLTAVDG------GGGG 263 p<-* + KIAA1400 264 G 264 PF00028.8.ls: domain 1 of 5, from 180 to 294: score 19.6, E = 0.0037 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++++E a +Gt+ A D+D g+N+ Y i++++ F+ KIAA1400 180 LTVEISESATPGTRFPLESAFDPD--VGTNSLRDYEITPNS---YFS 221 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgg.. +d +t + ++ + kpLDRE++ ++ ++ A+D++ gg++ KIAA1400 222 LDVQTQGDGNRfaeLVLEKPLDREQQ--AVHRYVLTAVDGG-----GGgg 264 ...............gpplsstatvtitVl<-* +++++++++ + ++++ +++ta +ti Vl KIAA1400 265 vgegggggggaglppQQQRTGTALLTIRVL 294 PF00028.8.fs: domain 4 of 7, from 308 to 402: score 91.7, E = 1.1e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y++s+pEn+p+Gt v++++AtD+D +g+Ng ++Ys++++ +++ + KIAA1400 308 YTVSLPENSPPGTLVIQLNATDPD--EGQNGEVVYSFSSHISpraRE 352 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F + p+tG+ + + +LD+Ee + Y ++v A+D g+ KIAA1400 353 LFGLSPRTGR----LEVSGELDYEES--PVYQVYVQAKDL-------GPN 389 plsstatvtitVl<-* + + + v + Vl KIAA1400 390 AVPAHCKVLVRVL 402 PF00028.8.ls: domain 2 of 5, from 308 to 402: score 93.6, E = 5.6e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y++s+pEn+p+Gt v++++AtD+D +g+Ng ++Ys++++ +++ + KIAA1400 308 YTVSLPENSPPGTLVIQLNATDPD--EGQNGEVVYSFSSHISpraRE 352 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F + p+tG+ + + +LD+Ee + Y ++v A+D g+ KIAA1400 353 LFGLSPRTGR----LEVSGELDYEES--PVYQVYVQAKDL-------GPN 389 plsstatvtitVl<-* + + + v + Vl KIAA1400 390 AVPAHCKVLVRVL 402 PF00028.8.ls: domain 3 of 5, from 416 to 507: score 58.9, E = 1.6e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr v+E+a++Gt v+ + +tD+D + Ng++ +lg+ p Fr KIAA1400 416 VKEAVSEGAAPGTVVALFSVTDRD--SEENGQVQCELLGDVP---FR 457 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + + + n +i t +pLDRE+ + Y+Ltv+A+D+ g+p+ls KIAA1400 458 LKS-SFKNYYTIVTEAPLDREAG--DSYTLTVVARDR-------GEPALS 497 statvtitVl<-* + ++ ++V KIAA1400 498 TSKSIQVQVS 507 PF00028.8.fs: domain 5 of 7, from 420 to 507: score 58.6, E = 3.4e-16 *->vpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpd v+E+a++Gt v+ + +tD+D + Ng++ +lg+ p Fr+ + KIAA1400 420 VSEGAAPGTVVALFSVTDRD--SEENGQVQCELLGDVP---FRLKS- 460 tGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpplsstat + n +i t +pLDRE+ + Y+Ltv+A+D+ g+p+ls+ + KIAA1400 461 SFKNYYTIVTEAPLDREAG--DSYTLTVVARDR-------GEPALSTSKS 501 vtitVl<-* + ++V KIAA1400 502 IQVQVS 507 PF00028.8.fs: domain 6 of 7, from 521 to 618: score 61.4, E = 5.4e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y + v En ++G + v AtD+D +g+N+++ Ysil+ ++ + KIAA1400 521 YDVYVTENNVPGAYIYAVSATDRD--EGANAQLAYSILECQIqgmsv 565 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg +I++++G ++ ++ D+E+ +++ veA+Da g KIAA1400 566 FTYVSINSENGY----LYALRSFDYEQL--KDFSFQVEARDA------GS 603 gpplsstatvtitVl<-* +++l + atv+i + KIAA1400 604 PQALAGNATVNILIV 618 PF00028.8.ls: domain 4 of 5, from 521 to 618: score 63.3, E = 7.4e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y + v En ++G + v AtD+D +g+N+++ Ysil+ ++ + KIAA1400 521 YDVYVTENNVPGAYIYAVSATDRD--EGANAQLAYSILECQIqgmsv 565 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg +I++++G ++ ++ D+E+ +++ veA+Da g KIAA1400 566 FTYVSINSENGY----LYALRSFDYEQL--KDFSFQVEARDA------GS 603 gpplsstatvtitVl<-* +++l + atv+i + KIAA1400 604 PQALAGNATVNILIV 618 PF00028.8.ls: domain 5 of 5, from 640 to 732: score 76.5, E = 7.8e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++ + +p G +++v+A+DaD g N+r++Ysi++gn+ + Fr KIAA1400 640 REVLPRSAEP-GYLLTRVAAVDAD--DGENARLTYSIVRGNEMNLFR 683 IdpdtGdnegiisttkpL..DREeifngeYeLtveAtDadpllasgggpp +d +tG+ ++t+++++ R + + YeL++e++D+ g+pp KIAA1400 684 MDWRTGE----LRTARRVpaKRDPQ--RPYELVIEVRDH-------GQPP 720 lsstatvtitVl<-* lsstat+++++ KIAA1400 721 LSSTATLVVQLV 732 PF00028.8.fs: domain 7 of 7, from 647 to 732: score 75.2, E = 5.9e-21 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G +++v+A+DaD g N+r++Ysi++gn+ + Fr+d +tG+ KIAA1400 647 AEPGYLLTRVAAVDAD--DGENARLTYSIVRGNEMNLFRMDWRTGE- 690 egiisttkpL..DREeifngeYeLtveAtDadpllasgggpplsstatvt ++t+++++ R + + YeL++e++D+ g+pplsstat++ KIAA1400 691 ---LRTARRVpaKRDPQ--RPYELVIEVRDH-------GQPPLSSTATLV 728 itVl<-* +++ KIAA1400 729 VQLV 732 //