hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01441994/chunk_1/iprscan-20080502-01441994.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1399
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           60.2    1.3e-20   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           62.1    1.6e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     205   250 ..     1    50 []    60.2  1.3e-20
PF00097.15.ls   1/1     205   250 ..     1    50 []    62.1  1.6e-15

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 205 to 250: score 60.2, E = 1.3e-20
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      CrIC++++++ +    l++pC++ Gs+k+ +++Cl +w+s++g+++C
    KIAA1399   205    CRICFQGPEQGE----LLSPCRCDGSVKCTHQPCLIKWISERGCWSC 247  

                   plC<-*
                   +lC   
    KIAA1399   248 ELC    250  

PF00097.15.ls: domain 1 of 1, from 205 to 250: score 62.1, E = 1.6e-15
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      CrIC++++++ +    l++pC++ Gs+k+ +++Cl +w+s++g+++C
    KIAA1399   205    CRICFQGPEQGE----LLSPCRCDGSVKCTHQPCLIKWISERGCWSC 247  

                   plC<-*
                   +lC   
    KIAA1399   248 ELC    250  

//