hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01405450/chunk_1/iprscan-20080502-01405450.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1397
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  26.8      0.003   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/2      79   118 ..     1    46 []    19.3     0.43
SM00320    2/2     167   203 ..     1    46 []     7.5       32

Alignments of top-scoring domains:
SM00320: domain 1 of 2, from 79 to 118: score 19.3, E = 0.43
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  + l+gH++  +V  v+++         + la+++ Dg i +W
    KIAA1397    79    PqRINFNLRGHNS--EVVLVRWNEPY------QKLATCDaDGGIFVW 117  

                   d<-*
                       
    KIAA1397   118 I    118  

SM00320: domain 2 of 2, from 167 to 203: score 7.5, E = 32
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++    l+   +   +t+  + pd+      ++++ g  Dg++ + 
    KIAA1397   167    HwSSEINLE---S--QITCGIWTPDD------QQVLFGTaDGQVIVM 202  

                   d<-*
                   d   
    KIAA1397   203 D    203  

//