hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01405450/chunk_1/iprscan-20080502-01405450.nocrc
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Query sequence: KIAA1397
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07525.6.fs SOCS box                                        38.1    8.1e-11   1
PF07525.6.ls SOCS box                                        40.0    7.7e-09   1
PF00400.22.fs WD domain, G-beta repeat                        21.3    4.9e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/2      80   118 ..     1    38 []    18.9  0.00024
PF07525.6.fs   1/1     382   419 ..     1    42 []    38.1  8.1e-11
PF07525.6.ls   1/1     382   419 ..     1    42 []    40.0  7.7e-09

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 2, from 80 to 118: score 18.9, E = 0.00024
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                            l+gH+s V  v+++ + ++ la++ +Dg i +W    
    KIAA1397    80    QRINfNLrGHNSEVVLVRWNEP-YQKLATCDADGGIFVWI    118  

PF07525.6.fs: domain 1 of 1, from 382 to 419: score 38.1, E = 8.1e-11
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      ++SLq LC  aI ++l++d +   + +L LPprL++YL+      
    KIAA1397   382    VSSLQLLCQQAIASTLREDKD---VSKLTLPPRLCSYLS-TA    419  

PF07525.6.ls: domain 1 of 1, from 382 to 419: score 40.0, E = 7.7e-09
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      ++SLq LC  aI ++l++d +   + +L LPprL++YL+      
    KIAA1397   382    VSSLQLLCQQAIASTLREDKD---VSKLTLPPRLCSYLS-TA    419  

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