# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj08255.fasta.huge -Q ../query/KIAA1397.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1397, 686 aa
 vs ./tmplib.24314 library

1986819 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.6461+/-0.00564; mu= 18.5358+/- 0.385
 mean_var=111.6702+/-25.716, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.121368

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1336  ( 1219 res)   bg00080                    (1219)  395 80.6   9e-16


>>KIAA1336  ( 1219 res)   bg00080                         (1219 aa)
 initn: 380 init1: 188 opt: 395  Z-score: 375.0  bits: 80.6 E(): 9e-16
Smith-Waterman score: 496;  29.330% identity (57.821% similar) in 358 aa overlap (28-378:43-369)

                  10        20        30        40        50       
KIAA13    VKQFIEESMYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATG
                                     :: :  .:.. : .  :     :.:..: :
KIAA13 VLPIGDVEPLLVEGLSGRRDPLGDPTMFFYLSKKISIPNNVKLQ--CVSWNKEQGFIACG
             20        30        40        50          60        70

        60            70        80          90       100       110 
KIAA13 NGRGVVGV----TFTSSHCRRDRSTPQRINFN--LRGHNSEVVLVRWNEPYQKLATCDAD
       .  :.. :    : :..   :  ..:. ...:  :.::.. : .: ::: ::::.: : .
KIAA13 GEDGLLKVLKLETQTDDAKLRGLAAPSNLSMNQTLEGHSGSVQVVTWNEQYQKLTTSDEN
               80        90       100       110       120       130

             120       130        140       150       160       170
KIAA13 GGIFVWIQYEGRWSVELVNDRGAQV-SDFTWSHDGTQALISYRDGFVLVGSVSGQRHWSS
       : :.::. :.: :  :..:.:. .:  ...:. :: .  : :.:: :.::::.:.: :..
KIAA13 GLIIVWMLYKGSWIEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGSVDGNRIWGK
              140       150       160       170       180       190

              180       190       200       210       220       230
KIAA13 EINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGVLGMSWNYPIF
       ...   :..   :. :.. .::: :.:.. ..: .: .. .. :    .: :      : 
KIAA13 DLK-GIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKLSCLVNVTGAISIAGIH
               200       210       220       230       240         

              240       250       260       270       280       290
KIAA13 LVEDSSESDTDSDDYAPPQDGPAAYPIPVQNIKPLLTVSFTSGDISLMNNYDDLSPTVIR
         . .       . :. :.              : :.: : .:  ..: . .: .:..: 
KIAA13 WYHGT-------EGYVEPD-------------CPCLAVCFDNGRCQIMRHENDQNPVLID
     250              260                    270       280         

              300       310       320       330       340       350
KIAA13 SGLKEVVAQWCTQGDLLAVAGMERQTQLGELPNGPLLKSAMVKFYNVRGEHIFTLDTLVQ
       .:.  :  ::  .:..:::::... ..  .  :       .:.::.  :::. ::  .  
KIAA13 TGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVN-------IVQFYTPFGEHLGTLK-VPG
     290       300       310       320              330        340 

              360       370       380       390       400       410
KIAA13 RPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVSKLTLPP
       . : .. :     .. .:    .: . .                                
KIAA13 KEISALSWEGGGLKIALAVDSFIYFANIRPNYKWGYCSNTVVYAYTRPDRPEYCVVFWDT
             350       360       370       380       390       400 




686 residues in 1 query   sequences
1986819 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:39 2008 done: Thu Dec 18 15:20:40 2008
 Total Scan time:  0.540 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]