hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01391629/chunk_1/iprscan-20080502-01391629.nocrc
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Query sequence: KIAA1396
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 406.5   1.5e-117  15

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/15    131   153 ..     1    23 []    29.0  0.00067
SM00355      2/15    159   181 ..     1    23 []    27.4    0.002
SM00355      3/15    187   209 ..     1    23 []    25.8   0.0059
SM00355      4/15    215   237 ..     1    23 []    28.5  0.00095
SM00355      5/15    243   265 ..     1    23 []    28.0   0.0013
SM00355      6/15    271   294 ..     1    23 []    24.8    0.012
SM00355      7/15    300   322 ..     1    23 []    21.4     0.12
SM00355      8/15    328   350 ..     1    23 []    28.0   0.0013
SM00355      9/15    356   378 ..     1    23 []    29.6  0.00043
SM00355     10/15    384   406 ..     1    23 []    29.5  0.00046
SM00355     11/15    412   434 ..     1    23 []    27.1   0.0024
SM00355     12/15    440   462 ..     1    23 []    26.6   0.0033
SM00355     13/15    468   490 ..     1    23 []    28.2   0.0011
SM00355     14/15    496   518 ..     1    23 []    27.2   0.0023
SM00355     15/15    524   546 ..     1    23 []    25.3   0.0086

Alignments of top-scoring domains:
SM00355: domain 1 of 15, from 131 to 153: score 29.0, E = 0.00067
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+k+f++ ++L+ H r+H   
    KIAA1396   131    FKCNE-CDKTFTHSsSLTVHFRIH    153  

SM00355: domain 2 of 15, from 159 to 181: score 27.4, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+++++L +H r+H   
    KIAA1396   159    YACEE-CGKAFKQRqHLAQHHRTH    181  

SM00355: domain 3 of 15, from 187 to 209: score 25.8, E = 0.0059
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C k f++ ++L++H+r+H   
    KIAA1396   187    FECKE-CRKAFKQSeHLIQHQRIH    209  

SM00355: domain 4 of 15, from 215 to 237: score 28.5, E = 0.00095
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C k f+++ +L +H+r+H   
    KIAA1396   215    YKCKE-CRKAFRQPaHLAQHQRIH    237  

SM00355: domain 5 of 15, from 243 to 265: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ +++ rH+r H   
    KIAA1396   243    YECKE-CGKAFSDGsSFARHQRCH    265  

SM00355: domain 6 of 15, from 271 to 294: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + Cgk f+  ++++rH r+ H   
    KIAA1396   271    YECIE-CGKAFRYNtSFIRHWRsYH    294  

SM00355: domain 7 of 15, from 300 to 322: score 21.4, E = 0.12
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C   Cgk fs +  L+ H r+H   
    KIAA1396   300    FNCID-CGKAFSVHiGLILHRRIH    322  

SM00355: domain 8 of 15, from 328 to 350: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+fss ++ + H+r+H   
    KIAA1396   328    YKCDV-CGKTFSSGsSRTVHQRIH    350  

SM00355: domain 9 of 15, from 356 to 378: score 29.6, E = 0.00043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i Cgk fs++ +L++H+rvH   
    KIAA1396   356    YECDI-CGKDFSHHaSLTQHQRVH    378  

SM00355: domain 10 of 15, from 384 to 406: score 29.5, E = 0.00046
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++  +L+ H+r+H   
    KIAA1396   384    YECKE-CGKAFRQNvHLVSHLRIH    406  

SM00355: domain 11 of 15, from 412 to 434: score 27.1, E = 0.0024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L  H+r+H   
    KIAA1396   412    YECKE-CGKAFRISsQLATHQRIH    434  

SM00355: domain 12 of 15, from 440 to 462: score 26.6, E = 0.0033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cg  f+++++L +H+++H   
    KIAA1396   440    YECIE-CGNAFKQRsHLAQHQKTH    462  

SM00355: domain 13 of 15, from 468 to 490: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+  +L++H+r+H   
    KIAA1396   468    YECNE-CGKAFSQTcNLTQHQRIH    490  

SM00355: domain 14 of 15, from 496 to 518: score 27.2, E = 0.0023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk fs+ ++  +H+r H   
    KIAA1396   496    YKCTE-CGKAFSDSsSCAQHQRLH    518  

SM00355: domain 15 of 15, from 524 to 546: score 25.3, E = 0.0086
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f++k +L+ H+r+H   
    KIAA1396   524    YQCFE-CGKAFRRKlSLICHQRSH    546  

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