hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01341510/chunk_1/iprscan-20080502-01341510.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1393 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02475.7.fs Met-10+ like-protein 266.1 4.4e-102 1 PF02475.7.ls Met-10+ like-protein 267.9 1.9e-77 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02475.7.fs 1/1 189 410 .. 1 260 [] 266.1 4.4e-102 PF02475.7.ls 1/1 189 410 .. 1 260 [] 267.9 1.9e-77 Alignments of top-scoring domains: PF02475.7.fs: domain 1 of 1, from 189 to 410: score 266.1, E = 4.4e-102 *->ssfdiIGDivilnipdElqpyrkvIgEaildktkkvKtVlrkggiVt s+f +IG+i++ln++d p++++Ig++ +dk++++ + ++k ++++ KIAA1393 189 SGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNID 235 GeyRtrrlEvlAGedrteTiHkEnGcrFKlDvsKVYfSprLsgEReRiak ++yR++++Evl Ge ++ T ++En++++++D+sKVY++prLs+E+ Ri KIAA1393 236 NMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITE 285 lYvkeGEvVvDMFAGiGPFsIPiAkhsKakrVyAvdlNPeavKyLkeNIk l k+G+v +D+FAG+GPF+IP+Ak K V+A+dlNPe+ K+L N k KIAA1393 286 L-LKPGDVLFDVFAGVGPFAIPVAK--KNCTVFANDLNPESHKWLLYNCK 332 LNKDKVegvIkpIlgDvrdVi..pqsenvADdvvrlekeGkivlilPkkk LN KV +++k+++ D++d++++p +e + + l ke +k+ KIAA1393 333 LN--KVDQKVKVFNLDGKDFLqgPVKEELMQ-LLGLSKE--------RKP 371 rrakkapkpeekevdiPssisRViMnlPksAheFLdkFRGAlravkdgie + ++V+MnlP++A++FL + + + dg KIAA1393 372 S-------------------VHVVMNLPAKAIKFLSA----FKWLLDG-- 396 avdldklpkvgViHY<-* + + V++Y KIAA1393 397 -QPCSSEFLPIVHCY 410 PF02475.7.ls: domain 1 of 1, from 189 to 410: score 267.9, E = 1.9e-77 *->ssfdiIGDivilnipdElqpyrkvIgEaildktkkvKtVlrkggiVt s+f +IG+i++ln++d p++++Ig++ +dk++++ + ++k ++++ KIAA1393 189 SGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNID 235 GeyRtrrlEvlAGedrteTiHkEnGcrFKlDvsKVYfSprLsgEReRiak ++yR++++Evl Ge ++ T ++En++++++D+sKVY++prLs+E+ Ri KIAA1393 236 NMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITE 285 lYvkeGEvVvDMFAGiGPFsIPiAkhsKakrVyAvdlNPeavKyLkeNIk l k+G+v +D+FAG+GPF+IP+Ak K V+A+dlNPe+ K+L N k KIAA1393 286 L-LKPGDVLFDVFAGVGPFAIPVAK--KNCTVFANDLNPESHKWLLYNCK 332 LNKDKVegvIkpIlgDvrdVi..pqsenvADdvvrlekeGkivlilPkkk LN KV +++k+++ D++d++++p +e + + l ke +k+ KIAA1393 333 LN--KVDQKVKVFNLDGKDFLqgPVKEELMQ-LLGLSKE--------RKP 371 rrakkapkpeekevdiPssisRViMnlPksAheFLdkFRGAlravkdgie + ++V+MnlP++A++FL + + + dg KIAA1393 372 S-------------------VHVVMNLPAKAIKFLSA----FKWLLDG-- 396 avdldklpkvgViHY<-* + + V++Y KIAA1393 397 -QPCSSEFLPIVHCY 410 //