# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hj06562.fasta.nr -Q ../query/KIAA1393.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1393, 500 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826762 sequences Expectation_n fit: rho(ln(x))= 5.2273+/-0.000181; mu= 11.0768+/- 0.010 mean_var=72.4005+/-14.232, 0's: 36 Z-trim: 40 B-trim: 0 in 0/66 Lambda= 0.150731 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|80478626|gb|AAI08285.1| TRM5 tRNA methyltransfe ( 509) 3290 724.7 1.4e-206 gi|145559536|sp|Q32P41.2|TRMT5_HUMAN RecName: Full ( 509) 3279 722.3 7.1e-206 gi|55640897|ref|XP_522871.1| PREDICTED: tRNA-(N1G3 ( 537) 3270 720.4 2.9e-205 gi|109083855|ref|XP_001097647.1| PREDICTED: simila ( 509) 3129 689.7 4.7e-196 gi|109083857|ref|XP_001097447.1| PREDICTED: simila ( 536) 3129 689.7 4.9e-196 gi|109083853|ref|XP_001097545.1| PREDICTED: simila ( 537) 3129 689.7 4.9e-196 gi|75048562|sp|Q95KJ2.1|TRMT5_MACFA RecName: Full= ( 509) 3110 685.6 8.2e-195 gi|194225071|ref|XP_001492987.2| PREDICTED: simila ( 559) 2925 645.4 1.1e-182 gi|119371016|sp|Q3MHN8.1|TRMT5_BOVIN RecName: Full ( 497) 2750 607.3 3e-171 gi|57090201|ref|XP_537470.1| PREDICTED: similar to ( 541) 2734 603.8 3.5e-170 gi|194034229|ref|XP_001924855.1| PREDICTED: simila ( 440) 2638 582.9 5.8e-164 gi|81904625|sp|Q9D0C4.1|TRMT5_MOUSE RecName: Full= ( 501) 2564 566.9 4.5e-159 gi|148704565|gb|EDL36512.1| TRM5 tRNA methyltransf ( 509) 2564 566.9 4.5e-159 gi|149051438|gb|EDM03611.1| TRM5 tRNA methyltransf ( 500) 2537 561.0 2.6e-157 gi|148704564|gb|EDL36511.1| TRM5 tRNA methyltransf ( 449) 2459 544.0 3.1e-152 gi|149051437|gb|EDM03610.1| TRM5 tRNA methyltransf ( 449) 2453 542.7 7.6e-152 gi|118092135|ref|XP_421419.2| PREDICTED: similar t ( 442) 2045 454.0 3.8e-125 gi|126631509|gb|AAI33896.1| LOC564078 protein [Dan ( 475) 1706 380.3 6.3e-103 gi|220678649|emb|CAX14731.1| novel protein similar ( 480) 1706 380.3 6.4e-103 gi|152012722|gb|AAI50348.1| LOC564078 protein [Dan ( 481) 1696 378.1 2.9e-102 gi|189527007|ref|XP_001922937.1| PREDICTED: simila ( 430) 1678 374.1 4e-101 gi|47230129|emb|CAG10543.1| unnamed protein produc ( 404) 1642 366.3 8.6e-99 gi|194034233|ref|XP_001924297.1| PREDICTED: simila ( 235) 1427 319.4 6.6e-85 gi|210090145|gb|EEA38430.1| hypothetical protein B ( 411) 1383 310.0 7.8e-82 gi|210117955|gb|EEA65689.1| hypothetical protein B ( 411) 1379 309.1 1.4e-81 gi|67678454|gb|AAH97924.1| MGC132022 protein [Xeno ( 294) 1366 306.2 7.8e-81 gi|115715496|ref|XP_001179975.1| PREDICTED: simila ( 453) 1273 286.1 1.3e-74 gi|115715498|ref|XP_784079.2| PREDICTED: similar t ( 456) 1268 285.0 2.9e-74 gi|76780162|gb|AAI06606.1| MGC132022 protein [Xeno ( 315) 1209 272.1 1.6e-70 gi|193919781|gb|EDW18648.1| GI13347 [Drosophila mo ( 435) 1171 263.9 6.2e-68 gi|156215816|gb|EDO36767.1| predicted protein [Nem ( 398) 1150 259.3 1.4e-66 gi|45445776|gb|AAN11538.2| CG32281 [Drosophila mel ( 457) 1144 258.0 3.8e-66 gi|194128241|gb|EDW50284.1| GM14540 [Drosophila se ( 457) 1142 257.6 5.1e-66 gi|194179607|gb|EDW93218.1| GE21330 [Drosophila ya ( 457) 1138 256.7 9.3e-66 gi|194164377|gb|EDW79278.1| GK19130 [Drosophila wi ( 449) 1136 256.3 1.2e-65 gi|194195450|gb|EDX09026.1| GD13733 [Drosophila si ( 457) 1135 256.1 1.5e-65 gi|194154128|gb|EDW69312.1| GJ13175 [Drosophila vi ( 438) 1131 255.2 2.6e-65 gi|193897474|gb|EDV96340.1| GH16197 [Drosophila gr ( 436) 1129 254.8 3.5e-65 gi|194118401|gb|EDW40444.1| GL24890 [Drosophila pe ( 440) 1124 253.7 7.4e-65 gi|198149995|gb|EDY73530.1| GA23546 [Drosophila ps ( 440) 1124 253.7 7.4e-65 gi|190653485|gb|EDV50728.1| GG15106 [Drosophila er ( 457) 1114 251.5 3.5e-64 gi|198432399|ref|XP_002124503.1| PREDICTED: simila ( 456) 1108 250.2 8.5e-64 gi|190624305|gb|EDV39829.1| GF20072 [Drosophila an ( 435) 1102 248.9 2e-63 gi|156537822|ref|XP_001608078.1| PREDICTED: simila ( 396) 1047 236.9 7.5e-60 gi|157016010|gb|EAA10891.4| AGAP006124-PA [Anophel ( 556) 1047 237.0 9.8e-60 gi|158273064|gb|EDO98857.1| tRNA-(N1G37) methyltra ( 400) 1034 234.1 5.4e-59 gi|108874288|gb|EAT38513.1| conserved hypothetical ( 562) 1033 234.0 8.2e-59 gi|217927670|gb|ACK57236.1| CG32281-like protein [ ( 359) 1026 232.3 1.7e-58 gi|167869740|gb|EDS33123.1| tRNA methyltransferase ( 466) 1021 231.3 4.3e-58 gi|91094613|ref|XP_968719.1| PREDICTED: similar to ( 507) 1019 230.9 6.2e-58 >>gi|80478626|gb|AAI08285.1| TRM5 tRNA methyltransferase (509 aa) initn: 3290 init1: 3290 opt: 3290 Z-score: 3865.3 bits: 724.7 E(): 1.4e-206 Smith-Waterman score: 3290; 99.800% identity (100.000% similar) in 500 aa overlap (1-500:10-509) 10 20 30 40 50 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM 10 20 30 40 50 60 60 70 80 90 100 110 KIAA13 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR 70 80 90 100 110 120 120 130 140 150 160 170 KIAA13 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA13 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA13 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD 250 260 270 280 290 300 300 310 320 330 340 350 KIAA13 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL 310 320 330 340 350 360 360 370 380 390 400 410 KIAA13 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAFKWLLDGQPCSSEFLPIVHCYS :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|804 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS 370 380 390 400 410 420 420 430 440 450 460 470 KIAA13 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN 430 440 450 460 470 480 480 490 500 KIAA13 PENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::: gi|804 PENHEDPPLKRQRTAEAFSDEKTQIVSNT 490 500 >>gi|145559536|sp|Q32P41.2|TRMT5_HUMAN RecName: Full=tRN (509 aa) initn: 3279 init1: 3279 opt: 3279 Z-score: 3852.3 bits: 722.3 E(): 7.1e-206 Smith-Waterman score: 3279; 99.600% identity (99.800% similar) in 500 aa overlap (1-500:10-509) 10 20 30 40 50 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM 10 20 30 40 50 60 60 70 80 90 100 110 KIAA13 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR 70 80 90 100 110 120 120 130 140 150 160 170 KIAA13 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA13 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|145 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLSFKHLIGQVMIDKNPGITSAVNKI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA13 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD 250 260 270 280 290 300 300 310 320 330 340 350 KIAA13 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL 310 320 330 340 350 360 360 370 380 390 400 410 KIAA13 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAFKWLLDGQPCSSEFLPIVHCYS :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|145 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS 370 380 390 400 410 420 420 430 440 450 460 470 KIAA13 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN 430 440 450 460 470 480 480 490 500 KIAA13 PENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::: gi|145 PENHEDPPLKRQRTAEAFSDEKTQIVSNT 490 500 >>gi|55640897|ref|XP_522871.1| PREDICTED: tRNA-(N1G37) m (537 aa) initn: 3270 init1: 3270 opt: 3270 Z-score: 3841.4 bits: 720.4 E(): 2.9e-205 Smith-Waterman score: 3270; 99.200% identity (99.800% similar) in 500 aa overlap (1-500:38-537) 10 20 30 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLT :::::::::::::::::::::::::::::: gi|556 TNSDDVIEDPPIHPRPTSDRYRSGRILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLT 10 20 30 40 50 60 40 50 60 70 80 90 KIAA13 QMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVL ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|556 QMLLEAPGIFLLGQRKRFSTMPEIETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVL 70 80 90 100 110 120 100 110 120 130 140 150 KIAA13 KVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 KVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVL 130 140 150 160 170 180 160 170 180 190 200 210 KIAA13 EQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFK :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|556 EQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFK 190 200 210 220 230 240 220 230 240 250 260 270 KIAA13 HLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 HLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKV 250 260 270 280 290 300 280 290 300 310 320 330 KIAA13 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYN 310 320 330 340 350 360 340 350 360 370 380 390 KIAA13 CKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAF ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|556 CKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAF 370 380 390 400 410 420 400 410 420 430 440 450 KIAA13 KWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 KWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNK 430 440 450 460 470 480 460 470 480 490 500 KIAA13 EMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::::::::::::::::::::.::: gi|556 EMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIASNT 490 500 510 520 530 >>gi|109083855|ref|XP_001097647.1| PREDICTED: similar to (509 aa) initn: 3129 init1: 3129 opt: 3129 Z-score: 3676.0 bits: 689.7 E(): 4.7e-196 Smith-Waterman score: 3129; 93.800% identity (98.800% similar) in 500 aa overlap (1-500:10-509) 10 20 30 40 50 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM :::: :.:::: :::::::::::.::::::: : :.::::::::::::::: gi|109 MVLWILWRPFGFSRRLLKLERHSITESKSLIPLAWTSLTQTLSESPGIFLLGQRKRFSTM 10 20 30 40 50 60 60 70 80 90 100 110 KIAA13 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR :: :::::..:::::::::::::::::::::::::::::::::::::.:::::.:::::: gi|109 PEIETHERDSELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSRLMRSLRRAALQR 70 80 90 100 110 120 120 130 140 150 160 170 KIAA13 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF :::.::::::::::::::.:::::::::::::::::::::::::::::::::::::::.: gi|109 PGIKRVIEDPEDKESRLILLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYENF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA13 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI ::::::::::::::::::::::.::::::::::::::::.:::::::::::::::::::: gi|109 KSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKQLIGQVMIDKNPGITSAVNKI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA13 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD ::::::::::.:::::::::::::::::.:::::::::::::::::::::::::::: :: gi|109 NNIDNMYRNFHMEVLSGEQNMMTKVRENKYTYEFDFSKVYWNPRLSTEHSRITELLKAGD 250 260 270 280 290 300 300 310 320 330 340 350 KIAA13 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL :::::::::::::::::::::::::::::::::::::.::::::::::::.::::::::: gi|109 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKIFNLDGKDFL 310 320 330 340 350 360 360 370 380 390 400 410 KIAA13 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAFKWLLDGQPCSSEFLPIVHCYS ::::::::.:::.::::::::::.:::::::::.:::::::::::::::.:::::::::: gi|109 QGPVKEELIQLLSLSKERKPSVHIVMNLPAKAIEFLSAFKWLLDGQPCSNEFLPIVHCYS 370 380 390 400 410 420 420 430 440 450 460 470 KIAA13 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN ::::::::.:::::::::::::::::::::::::::::::::::::::::.:::::::.: gi|109 FSKDANPAKDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPAAVLYKNQTKN 430 440 450 460 470 480 480 490 500 KIAA13 PENHEDPPLKRQRTAEAFSDEKTQIVSNT :::::::::::::::::::::::::.::: gi|109 PENHEDPPLKRQRTAEAFSDEKTQIASNT 490 500 >>gi|109083857|ref|XP_001097447.1| PREDICTED: similar to (536 aa) initn: 3129 init1: 3129 opt: 3129 Z-score: 3675.7 bits: 689.7 E(): 4.9e-196 Smith-Waterman score: 3129; 93.800% identity (98.800% similar) in 500 aa overlap (1-500:37-536) 10 20 30 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLT :::: :.:::: :::::::::::.:::::: gi|109 QPAQGCFPPRAARAQKHREVTHPPRILWRPFGFSRRLLKLERHSITESKSLIPLAWTSLT 10 20 30 40 50 60 40 50 60 70 80 90 KIAA13 QMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVL : : :.::::::::::::::::: :::::..::::::::::::::::::::::::::::: gi|109 QTLSESPGIFLLGQRKRFSTMPEIETHERDSELFSPPSDVRGMTKLDRTAFKKTVNIPVL 70 80 90 100 110 120 100 110 120 130 140 150 KIAA13 KVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVL ::::::::.:::::.:::::::::.::::::::::::::.:::::::::::::::::::: gi|109 KVRKEIVSRLMRSLRRAALQRPGIKRVIEDPEDKESRLILLDPYKIFTHDSFEKAELSVL 130 140 150 160 170 180 160 170 180 190 200 210 KIAA13 EQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFK :::::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::: gi|109 EQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFK 190 200 210 220 230 240 220 230 240 250 260 270 KIAA13 HLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKV .::::::::::::::::::::::::::::::.:::::::::::::::::.:::::::::: gi|109 QLIGQVMIDKNPGITSAVNKINNIDNMYRNFHMEVLSGEQNMMTKVRENKYTYEFDFSKV 250 260 270 280 290 300 280 290 300 310 320 330 KIAA13 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYN :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::.: gi|109 YWNPRLSTEHSRITELLKAGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLHN 310 320 330 340 350 360 340 350 360 370 380 390 KIAA13 CKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAF :::::::::::.:::::::::::::::::.:::.::::::::::.:::::::::.::::: gi|109 CKLNKVDQKVKIFNLDGKDFLQGPVKEELIQLLSLSKERKPSVHIVMNLPAKAIEFLSAF 370 380 390 400 410 420 400 410 420 430 440 450 KIAA13 KWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNK ::::::::::.::::::::::::::::::.:::::::::::::::::::::::::::::: gi|109 KWLLDGQPCSNEFLPIVHCYSFSKDANPAKDVRQRAGAVLGISLEACSSVHLVRNVAPNK 430 440 450 460 470 480 460 470 480 490 500 KIAA13 EMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT :::::::::::.:::::::.::::::::::::::::::::::::::.::: gi|109 EMLCITFQIPAAVLYKNQTKNPENHEDPPLKRQRTAEAFSDEKTQIASNT 490 500 510 520 530 >>gi|109083853|ref|XP_001097545.1| PREDICTED: similar to (537 aa) initn: 3129 init1: 3129 opt: 3129 Z-score: 3675.7 bits: 689.7 E(): 4.9e-196 Smith-Waterman score: 3129; 93.800% identity (98.800% similar) in 500 aa overlap (1-500:38-537) 10 20 30 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLT :::: :.:::: :::::::::::.:::::: gi|109 ANSDDVIEDQLIHWRPTSDRYRSRRILWRPFGFSRRLLKLERHSITESKSLIPLAWTSLT 10 20 30 40 50 60 40 50 60 70 80 90 KIAA13 QMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVL : : :.::::::::::::::::: :::::..::::::::::::::::::::::::::::: gi|109 QTLSESPGIFLLGQRKRFSTMPEIETHERDSELFSPPSDVRGMTKLDRTAFKKTVNIPVL 70 80 90 100 110 120 100 110 120 130 140 150 KIAA13 KVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVL ::::::::.:::::.:::::::::.::::::::::::::.:::::::::::::::::::: gi|109 KVRKEIVSRLMRSLRRAALQRPGIKRVIEDPEDKESRLILLDPYKIFTHDSFEKAELSVL 130 140 150 160 170 180 160 170 180 190 200 210 KIAA13 EQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFK :::::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::: gi|109 EQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFK 190 200 210 220 230 240 220 230 240 250 260 270 KIAA13 HLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKV .::::::::::::::::::::::::::::::.:::::::::::::::::.:::::::::: gi|109 QLIGQVMIDKNPGITSAVNKINNIDNMYRNFHMEVLSGEQNMMTKVRENKYTYEFDFSKV 250 260 270 280 290 300 280 290 300 310 320 330 KIAA13 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYN :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::.: gi|109 YWNPRLSTEHSRITELLKAGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLHN 310 320 330 340 350 360 340 350 360 370 380 390 KIAA13 CKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAF :::::::::::.:::::::::::::::::.:::.::::::::::.:::::::::.::::: gi|109 CKLNKVDQKVKIFNLDGKDFLQGPVKEELIQLLSLSKERKPSVHIVMNLPAKAIEFLSAF 370 380 390 400 410 420 400 410 420 430 440 450 KIAA13 KWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNK ::::::::::.::::::::::::::::::.:::::::::::::::::::::::::::::: gi|109 KWLLDGQPCSNEFLPIVHCYSFSKDANPAKDVRQRAGAVLGISLEACSSVHLVRNVAPNK 430 440 450 460 470 480 460 470 480 490 500 KIAA13 EMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT :::::::::::.:::::::.::::::::::::::::::::::::::.::: gi|109 EMLCITFQIPAAVLYKNQTKNPENHEDPPLKRQRTAEAFSDEKTQIASNT 490 500 510 520 530 >>gi|75048562|sp|Q95KJ2.1|TRMT5_MACFA RecName: Full=tRNA (509 aa) initn: 3110 init1: 3110 opt: 3110 Z-score: 3653.7 bits: 685.6 E(): 8.2e-195 Smith-Waterman score: 3110; 93.400% identity (98.400% similar) in 500 aa overlap (1-500:10-509) 10 20 30 40 50 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM :::: :.:::: :::::::::::.::::::: : :.::::::::::::::: gi|750 MVLWILWRPFGFSRRLLKLERHSITESKSLIPLAWTSLTQTLSESPGIFLLGQRKRFSTM 10 20 30 40 50 60 60 70 80 90 100 110 KIAA13 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR :: :::: ..:::::::::::::::::::::::::::::::::::::.:::::.:::::: gi|750 PEIETHEGDSELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSRLMRSLRRAALQR 70 80 90 100 110 120 120 130 140 150 160 170 KIAA13 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF :::.::::::::::::::.::::::::::::::: :::::::::::::::::::::::.: gi|750 PGIKRVIEDPEDKESRLILLDPYKIFTHDSFEKAGLSVLEQLNVSPQISKYNLELTYENF 130 140 150 160 170 180 180 190 200 210 220 230 KIAA13 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI ::::::::::::::::::::::.::::::::::::::::.:::::::::::::::::::: gi|750 KSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFKQLIGQVMIDKNPGITSAVNKI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA13 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD ::::::::::.:::::::::::::::::.:::::::::::::::::::::::::::: :: gi|750 NNIDNMYRNFHMEVLSGEQNMMTKVRENKYTYEFDFSKVYWNPRLSTEHSRITELLKAGD 250 260 270 280 290 300 300 310 320 330 340 350 KIAA13 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL :::::::::::::::::::::::::::::::::::::.::::::::::::.::::::::: gi|750 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKIFNLDGKDFL 310 320 330 340 350 360 360 370 380 390 400 410 KIAA13 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAFKWLLDGQPCSSEFLPIVHCYS ::::::::.:::.::::::::::.:::::::::.:::::::::::::::.:::::::::: gi|750 QGPVKEELIQLLSLSKERKPSVHIVMNLPAKAIEFLSAFKWLLDGQPCSNEFLPIVHCYS 370 380 390 400 410 420 420 430 440 450 460 470 KIAA13 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN ::::::::.:::::::::::::::::::::::::::::::::::::::::.:::::::.: gi|750 FSKDANPAKDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPAAVLYKNQTKN 430 440 450 460 470 480 480 490 500 KIAA13 PENHEDPPLKRQRTAEAFSDEKTQIVSNT :::::::::::::::::::::::::.::: gi|750 PENHEDPPLKRQRTAEAFSDEKTQIASNT 490 500 >>gi|194225071|ref|XP_001492987.2| PREDICTED: similar to (559 aa) initn: 2956 init1: 2099 opt: 2925 Z-score: 3435.7 bits: 645.4 E(): 1.1e-182 Smith-Waterman score: 2925; 88.822% identity (96.607% similar) in 501 aa overlap (1-500:60-559) 10 20 30 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLT :.:: :.::.:. ::::.: ::.::::: gi|194 ASGDDVIEGLPLRPPSLSELHQSMRILWRPFAFSRRLLKVENCRITESES-IPLAWTSLI 30 40 50 60 70 80 40 50 60 70 80 90 KIAA13 QMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVL : : .: ::::: :::::::::::::..:..:::.::::::::::::::::::::.:::: gi|194 QKLSRATGIFLLDQRKRFSTMPETETNQRDSELFAPPSDVRGMTKLDRTAFKKTVTIPVL 90 100 110 120 130 140 100 110 120 130 140 150 KIAA13 KVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVL ::::::::::::::::::::::::.::::::::.:::::::::::.::.::::::::..: gi|194 KVRKEIVSKLMRSLKRAALQRPGIKRVIEDPEDEESRLIMLDPYKMFTNDSFEKAELDIL 150 160 170 180 190 200 160 170 180 190 200 210 KIAA13 EQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFK .::::.:::::::::::::.:::::::::::::::::::::::.:::::::::::::::: gi|194 RQLNVNPQISKYNLELTYENFKSEEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFK 210 220 230 240 250 260 220 230 240 250 260 270 KIAA13 HLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKV :::::::::::::::::::::::::: ::::::::::::.:::::::::::::::::::: gi|194 HLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEENMMTKVRENNYTYEFDFSKV 270 280 290 300 310 320 280 290 300 310 320 330 KIAA13 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|194 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLHN 330 340 350 360 370 380 340 350 360 370 380 KIAA13 CKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLG-LSKERKPSVHVVMNLPAKAIKFLSA :::::::::::::::::::::::::.::::: :: :::::: :::.:::::::::.:::: gi|194 CKLNKVDQKVKVFNLDGKDFLQGPVREELMQQLGPLSKERKHSVHIVMNLPAKAIEFLSA 390 400 410 420 430 440 390 400 410 420 430 440 KIAA13 FKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPN :: :::::::.::.::::::::::::::::.::.:::::::::::::::::::::::::: gi|194 FKLLLDGQPCGSELLPIVHCYSFSKDANPAKDVQQRAGAVLGISLEACSSVHLVRNVAPN 450 460 470 480 490 500 450 460 470 480 490 500 KIAA13 KEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::.::::::: ::::.::::.::.:: .:::.:::::.: : gi|194 KEMLCITFQIPAAVLYKNQTPNPENYEDPPFKRRRTDKAFSEEKTQIASVT 510 520 530 540 550 >>gi|119371016|sp|Q3MHN8.1|TRMT5_BOVIN RecName: Full=tRN (497 aa) initn: 2790 init1: 2081 opt: 2750 Z-score: 3230.8 bits: 607.3 E(): 3e-171 Smith-Waterman score: 2750; 85.102% identity (94.694% similar) in 490 aa overlap (1-489:8-497) 10 20 30 40 50 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTMPE :.:: :.::.:: :::: ::: . :.:: : : ..: :::: :::::::::: gi|119 MRSLLKQFAFSRRLLKVESCRITESASLILLPWASLIQKLNRVPVIFLLDQRKRFSTMPE 10 20 30 40 50 60 60 70 80 90 100 110 KIAA13 TETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQRPG ::..:..:::::::.:::::.::::::::::.:::::::::.:.::::::::::::::: gi|119 IETNHRDSELFSPPSEVRGMTELDRTAFKKTVTIPVLKVRKEVVNKLMRSLKRAALQRPG 70 80 90 100 110 120 120 130 140 150 160 170 KIAA13 IRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHFKS :.:::::::: :.:::::::::.:: ::::: :::.:.::::.::::::::.::::.::: gi|119 IKRVIEDPEDGEGRLIMLDPYKMFTVDSFEKEELSILKQLNVNPQISKYNLDLTYENFKS 130 140 150 160 170 180 180 190 200 210 220 230 KIAA13 EEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINN ::::::::::::::::::::.::::::::::::::.:::::::::::::::::::::::: gi|119 EEILRAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPYKHLIGQVMIDKNPGITSAVNKINN 190 200 210 220 230 240 240 250 260 270 280 290 KIAA13 IDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVL ::: ::::.:::::::.::::::::::::::::::::::::::::::::::::::::::: gi|119 IDNTYRNFEMEVLSGEENMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVL 250 260 270 280 290 300 300 310 320 330 340 350 KIAA13 FDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQG :::::::::::::.:::.:::::::::::::::::.::::::::::::::::::.::::: gi|119 FDVFAGVGPFAIPAAKKKCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGRDFLQG 310 320 330 340 350 360 360 370 380 390 400 410 KIAA13 PVKEELMQLLG-LSKERKPSVHVVMNLPAKAIKFLSAFKWLLDGQPCSSEFLPIVHCYSF ::.::::: :: :::::: :::.:::::::::.:::::: ::.::::.::.::::::::: gi|119 PVREELMQQLGPLSKERKHSVHIVMNLPAKAIEFLSAFKALLEGQPCGSELLPIVHCYSF 370 380 390 400 410 420 420 430 440 450 460 470 KIAA13 SKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRNP :::::::.::.:::..:::::::: ::::::::::::::::::::.:::..:::::: : gi|119 SKDANPAKDVQQRAATVLGISLEAYSSVHLVRNVAPNKEMLCITFRIPAAILYKNQTVNR 430 440 450 460 470 480 480 490 500 KIAA13 ENHEDPPLKRQRTAEAFSDEKTQIVSNT .::: :::::::: . : gi|119 DNHEGPPLKRQRTDKDF 490 >>gi|57090201|ref|XP_537470.1| PREDICTED: similar to tRN (541 aa) initn: 2771 init1: 2073 opt: 2734 Z-score: 3211.4 bits: 603.8 E(): 3.5e-170 Smith-Waterman score: 2734; 84.568% identity (94.239% similar) in 486 aa overlap (1-485:54-539) 10 20 30 KIAA13 FGFSGRFLKLESHSITESKSLIPVAWTSLT :::: ..:.:: :.::.:: ..::: gi|570 GSSLGVHRGALPGIGVVTLARRRPQILWKPFGFSRILFKVESCRISESESLTLLVWTSQI 30 40 50 60 70 80 40 50 60 70 80 90 KIAA13 QMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVL : : .:::::: ::::::.::: :: .:.. ::::::.::::::::::::.:::.:::: gi|570 QKLSRAPGIFLWDQRKRFSVMPEIETDQRDSALFSPPSNVRGMTKLDRTAFRKTVTIPVL 90 100 110 120 130 140 100 110 120 130 140 150 KIAA13 KVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVL :::::::.::::::::::::::::.::::::::. .::::::::::.: ::::.::::.: gi|570 KVRKEIVNKLMRSLKRAALQRPGIKRVIEDPEDEANRLIMLDPYKIITGDSFERAELSIL 150 160 170 180 190 200 160 170 180 190 200 210 KIAA13 EQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFK .::::.:::::::::::::.:::::::.:::::::::::::::.:::::::::::::::: gi|570 KQLNVNPQISKYNLELTYENFKSEEILKAVLPEGQDVTSGFSRVGHIAHLNLRDHQLPFK 210 220 230 240 250 260 220 230 240 250 260 270 KIAA13 HLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKV :::::::::::::::::::::::::: ::::::::::::.:::::::::.:::::::::: gi|570 HLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEENMMTKVRENSYTYEFDFSKV 270 280 290 300 310 320 280 290 300 310 320 330 KIAA13 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|570 YWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLHN 330 340 350 360 370 380 340 350 360 370 380 KIAA13 CKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLG-LSKERKPSVHVVMNLPAKAIKFLSA :::::::::::::::::::::::::..:::. :: :::::: :::.:::::::::.::.. gi|570 CKLNKVDQKVKVFNLDGKDFLQGPVRKELMEQLGPLSKERKHSVHIVMNLPAKAIEFLNV 390 400 410 420 430 440 390 400 410 420 430 440 KIAA13 FKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPN :: :::: :..:.:::::::::::: ::::::.:::::.:::::::::::: ::::::: gi|570 FKSLLDGPSCNTELLPIVHCYSFSKDPNPAEDVQQRAGAILGISLEACSSVHPVRNVAPN 450 460 470 480 490 500 450 460 470 480 490 500 KIAA13 KEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::.:::..:::::: : :::.:::::::.: gi|570 KEMLCITFRIPAAILYKNQTLNLENHDDPPLKRQKTDK 510 520 530 540 500 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 15:17:26 2009 done: Wed Mar 4 15:21:37 2009 Total Scan time: 1510.810 Total Display time: 0.210 Function used was FASTA [version 34.26.5 April 26, 2007]