hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01310145/chunk_1/iprscan-20080502-01310145.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1391
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 169.0    4.6e-46   1
SM00233                                                  28.2     0.0012   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      89   190 ..     1    82 []    28.2   0.0012
SM00324     1/1     377   551 ..     1   193 []   169.0  4.6e-46

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 89 to 190: score 28.2, E = 0.0012
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk.....kpkgsipLs
                      +++ G    k + ++++r+++Lfn+ ++  k k +++ k k +i L+
    KIAA1391    89    LLIDGRAELKRGlQRQERHLFLFNDLFVVAKIKynnnfKIKNKIKLT 135  

                   gc.svre.p...........cFeivt.drtlllqAeseeereeWvealqs
                   ++ + ++ ++ ++++ +  ++F +  ++  ++  ++s+e++++W++ lq+
    KIAA1391   136 DMwTASCvDevgegntnamkSFVLGWpTVNFVATFSSPEQKDKWLSLLQR 185  

                   aiaka<-*
                    i+     
    KIAA1391   186 YINLE    190  

SM00324: domain 1 of 1, from 377 to 551: score 169.0, E = 4.6e-46
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +++P+ v  +  +l + G  t+GI+R s++++ ++eL+e+++sg + 
    KIAA1391   377    DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEv 423  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                                  l+ +++ ++A++LK +LR+ P +++ ++ly+ +++
    KIAA1391   424 H--------------LDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVS 459  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   ++                 ++ee++  +++ll +LP+an  +LryL++ L
    KIAA1391   460 VMDQ--------------GNDEEKINTVQRLLDQLPRANVVLLRYLFgVL 495  

                   nrVaehsevNkMtarNLAivFgPtLlrpp........ltdikhqnkvvet
                   +++ +hs++N Mta NLA++ +P++l+pp +++++ +   +k+++ ++++
    KIAA1391   496 HNIEQHSSSNQMTAFNLAVCVAPSILWPPassspeleNEFTKKVSLLIQF 545  

                   lienad<-*
                   lien++   
    KIAA1391   546 LIENCL    551  

//