hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01310145/chunk_1/iprscan-20080502-01310145.nocrc
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Query sequence: KIAA1391
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  205.4    2.6e-60   1
PF00620.17.ls RhoGAP domain                                  207.3    3.2e-59   1
PF00788.13.ls Ras association (RalGDS/AF-6) domain            58.4    2.1e-14   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            56.5    2.6e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00788.13.fs   1/1     197   286 ..     1    97 []    56.5  2.6e-14
PF00788.13.ls   1/1     197   286 ..     1    97 []    58.4  2.1e-14
PF00620.17.fs   1/1     380   530 ..     1   155 []   205.4  2.6e-60
PF00620.17.ls   1/1     380   530 ..     1   155 []   207.3  3.2e-59

Alignments of top-scoring domains:
PF00788.13.fs: domain 1 of 1, from 197 to 286: score 56.5, E = 2.6e-14
                   *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp
                      +s  l+++  d+ ++  +kti v +++Ta eVi++ L ++g+ + + 
    KIAA1391   197    KSIPLKIFAKDIGNCAySKTITVMNSDTANEVINMSLPMLGI-TGSE 242  

                   edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrre
                   +dy+L++     ++++  + +L  +E+P+ i + + r   +s +l  + +
    KIAA1391   243 RDYQLWV---NSGKEEAPY-PLIGHEYPYGIKMSHLR---DSALLTPGSK 285  

                   d<-*
                   d   
    KIAA1391   286 D    286  

PF00788.13.ls: domain 1 of 1, from 197 to 286: score 58.4, E = 2.1e-14
                   *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp
                      +s  l+++  d+ ++  +kti v +++Ta eVi++ L ++g+ + + 
    KIAA1391   197    KSIPLKIFAKDIGNCAySKTITVMNSDTANEVINMSLPMLGI-TGSE 242  

                   edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrre
                   +dy+L++     ++++  + +L  +E+P+ i + + r   +s +l  + +
    KIAA1391   243 RDYQLWV---NSGKEEAPY-PLIGHEYPYGIKMSHLR---DSALLTPGSK 285  

                   d<-*
                   d   
    KIAA1391   286 D    286  

PF00620.17.fs: domain 1 of 1, from 380 to 530: score 205.4, E = 2.6e-60
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++v +++ fl ++G+ t+GI+R+s++++ ++eL+e++++g +v   
    KIAA1391   380    PKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEV--- 423  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   +l++e++ v+As+LK+FLR++P ++++ +ly++++  +++  ++ee+++ 
    KIAA1391   424 HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVS-VMDQGNDEEKINT 472  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++ll++LP+aN  +LryL++ L+++ q+s+ N+Mta NLA++ +P++l+
    KIAA1391   473 VQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILW 522  

                   ppdgdsad<-*
                   pp++ s++   
    KIAA1391   523 PPASSSPE    530  

PF00620.17.ls: domain 1 of 1, from 380 to 530: score 207.3, E = 3.2e-59
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++v +++ fl ++G+ t+GI+R+s++++ ++eL+e++++g +v   
    KIAA1391   380    PKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEV--- 423  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   +l++e++ v+As+LK+FLR++P ++++ +ly++++  +++  ++ee+++ 
    KIAA1391   424 HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVS-VMDQGNDEEKINT 472  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++ll++LP+aN  +LryL++ L+++ q+s+ N+Mta NLA++ +P++l+
    KIAA1391   473 VQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILW 522  

                   ppdgdsad<-*
                   pp++ s++   
    KIAA1391   523 PPASSSPE    530  

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