hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01224493/chunk_1/iprscan-20080502-01224493.nocrc
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Query sequence: KIAA1386
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00647                                                  90.4    2.1e-22   2
SM00248                                                  58.6    7.8e-13   2
SM00184                                                  25.9     0.0058   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/2     170   199 ..     1    30 []    25.6   0.0068
SM00248    2/2     269   298 ..     1    30 []    33.0    4e-05
SM00184    1/2     458   506 ..     1    23 []    19.0     0.13
SM00647    1/2     527   603 ..     1    78 []    56.6  3.2e-12
SM00647    2/2     626   690 ..     1    78 []    33.8  2.3e-05
SM00184    2/2     644   768 ..     1    23 []     6.8      3.3

Alignments of top-scoring domains:
SM00248: domain 1 of 2, from 170 to 199: score 25.6, E = 0.0068
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + +TpLH+Aa++g  +++  +l +++++n+   
    KIAA1386   170    QHNTPLHYAARHGMNKILGTFLGRDGNPNK    199  

SM00248: domain 2 of 2, from 269 to 298: score 33.0, E = 4e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpLH+Aa++g + +v+lL+++g+d+ a   
    KIAA1386   269    KKNTPLHYAAASGMKACVELLVKHGGDLFA    298  

SM00184: domain 1 of 2, from 458 to 506: score 19.0, E = 0.13
                   *->CpICle.......pvvlpCgH.FCr.Ci.................CP
                      C IC+++ +  ++pv +pCgH+FCr+C ++  + + ++++ ++  CP
    KIAA1386   458    CDICMCsisvfedPVDMPCGHdFCRgCWesflnlkiqegeahnifCP 504  

                   lC<-*
                        
    KIAA1386   505 AY    506  

SM00647: domain 1 of 2, from 527 to 603: score 56.6, E = 3.2e-12
                   *->ekYerlllesyvesnpdlkwCPapdCsaairvtelsts.r.saisga
                      ++Y ++  + +ve+np +kwCP p+C  a+r t+ ++ + +s + ++
    KIAA1386   527    KRYLQFDIKAFVENNPAIKWCPTPGCDRAVRLTKQGSNtSgSDTLSF 573  

                   sdeegcnrvtCprkCgfsFCfrCkvewHspvsC<-*
                   +    +  v C  + g+ FC+ C+ e+H+p++C   
    KIAA1386   574 PLLRAP-AVDC--GKGHLFCWECLGEAHEPCDC    603  

SM00647: domain 2 of 2, from 626 to 690: score 33.8, E = 2.3e-05
                   *->ekYerlllesyvesnpdlkwCPapdCsaairvtelstsrsaisgasd
                      e Ye+     ++ +  ++k C   +C + i++               
    KIAA1386   626    EAYEDAANCLWLLT--NSKPCA--NCKSPIQKN-------------- 654  

                   eegcnrvtCprkCgfsFCfrCkvew..Hspv.....sC<-*
                    egcn+++C  kC++ FC+ C++ew++Hs ++++   C   
    KIAA1386   655 -EGCNHMQCA-KCKYDFCWICLEEWkkHSSStggyyRC    690  

SM00184: domain 2 of 2, from 644 to 768: score 6.8, E = 3.3
                   *->CpICle..........pvvlpCgH.FCr.Ci................
                      C+ C+++ +++++ +++ + +C  +FC+ C+++++++++++++  + 
    KIAA1386   644    CANCKSpiqknegcnhMQCAKCKYdFCWiCLeewkkhssstggyyrc 690  

                   ..................................................
                   ++ +  ++ ++++++ + + ++++++ ++ ++  +  ++ ++++++ + +
    KIAA1386   691 tryeviqhveeqskemtveaekkhkrfqeldrfmhyytrfknhehsyqle 740  

                   ........................CPlC<-*
                   ++  ++ +++ ++ ++  ++++++CP     
    KIAA1386   741 qrllktakekmeqlsralketeggCPDT    768  

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