hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01224493/chunk_1/iprscan-20080502-01224493.nocrc
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Query sequence: KIAA1386
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01485.11.fs IBR domain                                      79.0    3.3e-24   2
PF01485.11.ls IBR domain                                      69.6    9.2e-18   1
PF00023.20.ls Ankyrin repeat                                  59.3    1.2e-14   2
PF00023.20.fs Ankyrin repeat                                  55.3      2e-14   2
PF02809.10.fs Ubiquitin interaction motif                     17.5     0.0022   1
PF02809.10.ls Ubiquitin interaction motif                     19.5      0.011   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/2     170   202 ..     1    33 []    22.2  3.3e-05
PF00023.20.ls   1/2     170   202 ..     1    33 []    24.2  0.00043
PF00023.20.fs   2/2     269   301 ..     1    33 []    33.1  3.1e-08
PF00023.20.ls   2/2     269   301 ..     1    33 []    35.1  2.3e-07
PF01485.11.fs   1/2     527   603 ..     1    72 []    67.6  1.2e-20
PF01485.11.ls   1/1     527   603 ..     1    72 []    69.6  9.2e-18
PF01485.11.fs   2/2     643   677 ..    22    66 ..    11.4   0.0041
PF02809.10.ls   1/1     975   992 ..     1    18 []    19.5    0.011
PF02809.10.fs   1/1     975   992 ..     1    18 []    17.5   0.0022

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 2, from 170 to 202: score 22.2, E = 3.3e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPLH+Aa++g  +++  +l++  ++n ++    
    KIAA1386   170    QHNTPLHYAARHGMNKILGTFLGRDGNPNKRNV    202  

PF00023.20.ls: domain 1 of 2, from 170 to 202: score 24.2, E = 0.00043
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPLH+Aa++g  +++  +l++  ++n ++    
    KIAA1386   170    QHNTPLHYAARHGMNKILGTFLGRDGNPNKRNV    202  

PF00023.20.fs: domain 2 of 2, from 269 to 301: score 33.1, E = 3.1e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPLH+Aa +g + +v+lL+++G dl a +    
    KIAA1386   269    KKNTPLHYAAASGMKACVELLVKHGGDLFAENE    301  

PF00023.20.ls: domain 2 of 2, from 269 to 301: score 35.1, E = 2.3e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPLH+Aa +g + +v+lL+++G dl a +    
    KIAA1386   269    KKNTPLHYAAASGMKACVELLVKHGGDLFAENE    301  

PF01485.11.fs: domain 1 of 2, from 527 to 603: score 67.6, E = 1.2e-20
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlss.g......sk
                      ++Y ++  + +ve n+  kwCP p+C+++vr+t  +s+ +++++ s 
    KIAA1386   527    KRYLQFDIKAFVENNPAIKWCPTPGCDRAVRLTKQGSnTsgsdtlSF 573  

                   eepssrrveCskGCgfeFCfnCkeewHgplsC<-*
                   ++  ++ v C k  g+ FC++C+ e+H+p++C   
    KIAA1386   574 PLLRAPAVDCGK--GHLFCWECLGEAHEPCDC    603  

PF01485.11.ls: domain 1 of 1, from 527 to 603: score 69.6, E = 9.2e-18
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlss.g......sk
                      ++Y ++  + +ve n+  kwCP p+C+++vr+t  +s+ +++++ s 
    KIAA1386   527    KRYLQFDIKAFVENNPAIKWCPTPGCDRAVRLTKQGSnTsgsdtlSF 573  

                   eepssrrveCskGCgfeFCfnCkeewHgplsC<-*
                   ++  ++ v C k  g+ FC++C+ e+H+p++C   
    KIAA1386   574 PLLRAPAVDCGK--GHLFCWECLGEAHEPCDC    603  

PF01485.11.fs: domain 2 of 2, from 643 to 677: score 11.4, E = 0.0041
                   *->PapdCsyivrvtdlssgskeepssrrveCskGCgfeFCfnCkeew<-
                      P ++C+++++++          +++  +C k C + FC+ C+eew  
    KIAA1386   643    PCANCKSPIQKN---------EGCNHMQCAK-CKYDFCWICLEEW   677  

                   *
                    
    KIAA1386     -   -    

PF02809.10.ls: domain 1 of 1, from 975 to 992: score 19.5, E = 0.011
                   *->mdEEedLqlALalSlqea<-*
                      +++++++ lA++lSlqe+   
    KIAA1386   975    DEDDPNILLAIQLSLQES    992  

PF02809.10.fs: domain 1 of 1, from 975 to 992: score 17.5, E = 0.0022
                   *->mdEEedLqlALalSlqea<-*
                      +++++++ lA++lSlqe+   
    KIAA1386   975    DEDDPNILLAIQLSLQES    992  

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