# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj06274.fasta.huge -Q ../query/KIAA1386.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1386, 1214 aa
 vs ./tmplib.24314 library

1986291 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.2340+/-0.00701; mu= 14.2132+/- 0.477
 mean_var=186.8728+/-45.279, 0's: 0 Z-trim: 6  B-trim: 0 in 0/40
 Lambda= 0.093821

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0708  ( 1753 res)   hh01062b(revised)          (1753)  278 51.3 1.6e-06


>>KIAA0708  ( 1753 res)   hh01062b(revised)               (1753 aa)
 initn: 397 init1: 215 opt: 278  Z-score: 208.9  bits: 51.3 E(): 1.6e-06
Smith-Waterman score: 502;  26.000% identity (50.800% similar) in 500 aa overlap (351-841:1239-1641)

              330       340       350       360       370       380
KIAA13 NLESQMVFSRDPEAEEIEAEYAALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTA
                                     :::  : .:.... : .:  :.       :
KIAA07 SETSKPSPEAVATLASLQLPAGRTMSPQEVEGLMKQTVRQVQETLNLEP-DV-------A
     1210      1220      1230      1240      1250              1260

              390       400       410       420       430       440
KIAA13 EALLRAHDWDREKLLEAWMSNPENCCQRSGVQMPTPPPSGYNAWDTLPSPRTPRTTRSSV
       . ::    :  :.::...  .::          :    .:  . ..   :          
KIAA07 QHLLAHSHWGAEQLLQSYSEDPE----------PLLLAAGLCVHQAQAVP----------
             1270      1280                1290      1300          

              450       460       470       480       490       500
KIAA13 TSPDEISLSPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQEGEAHN
       . ::.            : .:.  ..  .:  .. : :  :..::. .:. .:... . :
KIAA07 VRPDH------------CPVCVSPLGCDDDLPSLCCMHYCCKSCWNEYLTTRIEQNLVLN
                         1310      1320      1330      1340        

              510       520        530       540       550         
KIAA13 IFCPAYDCFQLVPVDIIESVVSK-EMDKRYLQFDIKAFVENNPAIKWCPTP-GCDRAVRL
         ::  ::       .:...::. :. ..: .  ....::.   . :: .: ::::   :
KIAA07 CTCPIADCPAQPTGAFIRAIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRI--L
     1350      1360      1370      1380      1390      1400        

      560       570       580        590        600       610      
KIAA13 TKQGSNTSGSDTLSFPLLRAPAVDCGK-GHLFCWEC-LGEAHEPCDCQTWKNWLQKITEM
        .::    :  :            :.: :   :..: . ::: : .:   ..:..    .
KIAA07 CRQGL---GCGTT-----------CSKCGWASCFNCSFPEAHYPASCGHMSQWVDDGGYY
       1410                    1420      1430      1440      1450  

        620       630       640       650       660       670      
KIAA13 KPEELVGVSEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEE
             :.:   :  .. :  :  :: : .:..::.::::: :: ::::.. ::: ::. 
KIAA07 D-----GMS--VEAQSKHLAKLI-SKRCPSCQAPIEKNEGCLHMTCAKCNHGFCWRCLKS
                  1460       1470      1480      1490      1500    

        680       690       700       710       720       730      
KIAA13 WKKHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRFKNHEHS
       :: . ..   :: :.              :. .: ...::::. ..   ..   . .: .
KIAA07 WKPNHKD---YYNCS-------------AMVSKAARQEKRFQDYNERCTFH--HQAREFA
         1510                      1520      1530        1540      

        740       750       760        770       780       790     
KIAA13 YQLEQRLLKTAKEKMEQLSRALKETEGGCPDT-TFIEDAVHVLLKTRRILKCSYPYGFFL
        .:..:.             :..:.    : . ::..:: . : ..:..:  .  :.:. 
KIAA07 VNLRNRV------------SAIHEVPP--PRSFTFLNDACQGLEQARKVLAYACVYSFYS
       1550                  1560        1570      1580      1590  

         800       810       820           830       840       850 
KIAA13 EPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLR----TPRHKIIKAACLVQQKRQEFLA
       .  .   .. : .  .::. :. :   ...  ::    .   ....: ::          
KIAA07 QD-AEYMDVVEQQTENLELHTNALQILLEETLLRCRDLASSLRLLRADCLSTGMELLRRI
            1600      1610      1620      1630      1640      1650 

             860       870       880       890       900       910 
KIAA13 SVARGVAPADSPEAPRRSFAGGTWDWEYLGFASPEEYAEFQYRRRHRQRRRGDVHSLLSN
                                                                   
KIAA07 QERLLAILQHSAQDFRVGLQSPSVEAWEAKGPNMPGSQPQASSGPEAEEEEEDDEDDVPE
            1660      1670      1680      1690      1700      1710 




1214 residues in 1 query   sequences
1986291 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:12 2008 done: Thu Dec 18 15:20:13 2008
 Total Scan time:  0.740 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]