hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01192931/chunk_1/iprscan-20080502-01192931.nocrc
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Query sequence: KIAA1384
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00612 184.4 1.1e-50 6
SM00225 98.3 8.8e-25 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00225 1/1 57 205 .. 1 114 [] 98.3 8.8e-25
SM00612 1/6 347 396 .. 1 55 [] 18.9 0.15
SM00612 2/6 397 448 .. 1 55 [] 23.3 0.035
SM00612 3/6 449 495 .. 1 55 [] 63.6 2.6e-14
SM00612 4/6 496 542 .. 1 55 [] 34.3 1.7e-05
SM00612 5/6 543 594 .. 1 55 [] 30.2 0.00028
SM00612 6/6 595 644 .. 1 55 [] 14.1 0.52
Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 57 to 205: score 98.3, E = 8.8e-25
*->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
cDvtl ++g ++fh+ HkavLa+c S yF++lf+s+
KIAA1384 57 CDVTLTAQG---------QQFHC--HKAVLASC---SQYFRSLFSSh 89
..................................................
++ +++ +++++ + ++++++++++++++++++++++++++++++++++
KIAA1384 90 pplgggvggqdglgapkdqqqppqqqpsqqqqpppqeepgtpssspddkl 139
.........ieldDeallievspeaFralLnflYt.kldlpeedvenvee
++++ ++ l++ s +r++L++lYt + l+ + +vee
KIAA1384 140 ltsprainnLVLQG------CSSIGLRLVLEYLYTaNVTLSLD---TVEE 180
lLelAdfldSYGqip.lvelCeefllknl<-*
+L + l +ip++++lC +fl +++
KIAA1384 181 VLSVSKIL----HIPqVTKLCVQFLNDQI 205
SM00612: domain 1 of 6, from 347 to 396: score 18.9, E = 0.15
*->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
+ vGG + ++ ++ v +YD e ++W++++ Mp+ ++
KIAA1384 347 MLLLVGGLPPGPD-----RLPSNLVQYYDDEKKTWKILTIMPYNSAH 388
agvaving<-*
++v+ +++
KIAA1384 389 HCVVEVEN 396
SM00612: domain 2 of 6, from 397 to 448: score 23.3, E = 0.035
*->kiYvvGG...fdgttrclpgegqrlksvEvYDpetnkWrpvpsMptp
++v GG+++++++ ++++++ v +YDp+ n W ++p+M+ +
KIAA1384 397 FLFVLGGedqWNPN------GKHSTNFVSRYDPRFNSWIQLPPMQER 437
Rsgagvaving<-*
R+ + ++ +++
KIAA1384 438 RASFYACRLDK 448
SM00612: domain 3 of 6, from 449 to 495: score 63.6, E = 2.6e-14
*->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
++Yv+GG++ + +l+svE+Y++etn+Wr v s+p+p +
KIAA1384 449 HLYVIGGRNE--------TGYLSSVECYNLETNEWRYVSSLPQPLAA 487
agvaving<-*
++ av+ng
KIAA1384 488 HAGAVHNG 495
SM00612: domain 4 of 6, from 496 to 542: score 34.3, E = 1.7e-05
*->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
kiY+ GG ++ g+++ +YDp + W + +M+t+R+
KIAA1384 496 KIYISGGVHN--------GEYVPWLYCYDPVMDVWARKQDMNTKRAI 534
agvaving<-*
+ +av+n+
KIAA1384 535 HTLAVMND 542
SM00612: domain 5 of 6, from 543 to 594: score 30.2, E = 0.00028
*->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvp.sMptpR
++Y++GG ++ l++ + + vE+YDp+ ++W ++ ++ +R
KIAA1384 543 RLYAIGG-NH----LKgFSHLDVMLVECYDPKGDQWNILQtPILEGR 584
sgagvaving<-*
sg g+av+++
KIAA1384 585 SGPGCAVLDD 594
SM00612: domain 6 of 6, from 595 to 644: score 14.1, E = 0.52
*->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvp.sMptpRs
iY vGG++ + g + +s+ +Y pe ++W+++ ++ p +
KIAA1384 595 SIYLVGGYSWSM------GAYKSSTICYCPEKGTWTELEgDVAEPLA 635
gagvaving<-*
g +++++
KIAA1384 636 GPACVTVIL 644
//