hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01160643/chunk_1/iprscan-20080502-01160643.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1382 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01490.8.fs Transmembrane amino acid transporter protein 267.2 3e-77 2 PF01490.8.ls Transmembrane amino acid transporter protein 265.8 7.8e-77 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01490.8.fs 1/2 69 237 .. 1 194 [. 123.9 4.3e-34 PF01490.8.ls 1/1 69 495 .. 1 461 [] 265.8 7.8e-77 PF01490.8.fs 2/2 281 495 .. 214 461 .] 143.4 5.8e-40 Alignments of top-scoring domains: PF01490.8.fs: domain 1 of 2, from 69 to 237: score 123.9, E = 4.3e-34 *->rtisalqavfnlikaivGaGvLsLPyAfkqlGwipGlillvlvglis +t+s++++vfnl++aivG+G+L+L+yA+++ G+ +++ill++v+++s KIAA1382 69 GTTSFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFS 115 lytlllLvkcskyldkvekgkrrksYgdlgkasqvsypyrllGpkmgrll ly+ +lL k++ ++ +++ Y +lg y+++G g+l+ KIAA1382 116 LYSVHLLLKTA-------NEGGSLLYEQLG--------YKAFGLV-GKLA 149 infaillnlfGvcivYlifagdnLpaifdsffsdksgendpchislayfi + +i+ +++G++++Yl ++ + Lp +++ + ++++ ++++ ++ KIAA1382 150 ASGSITMQNIGAMSSYLFIVKYELPLVIQALTNIEDKTGLWYLNGNYLVL 199 lifglifipLsvflpnlsaLsilSlvaavssliysiglliivilvvi<-* l+++++++pLs +++nl +L+++S++++ +++++ ++vvi KIAA1382 200 LVSLVVILPLS-LFRNLGYLGYTSGLSLLCMVFF--------LIVVI 237 PF01490.8.ls: domain 1 of 1, from 69 to 495: score 265.8, E = 7.8e-77 *->rtisalqavfnlikaivGaGvLsLPyAfkqlGwipGlillvlvglis +t+s++++vfnl++aivG+G+L+L+yA+++ G+ +++ill++v+++s KIAA1382 69 GTTSFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFS 115 lytlllLvkcskyldkvekgkrrksYgdlgkasqvsypyrllGpkmgrll ly+ +lL k++ ++ +++ Y +lg y+++G g+l+ KIAA1382 116 LYSVHLLLKTA-------NEGGSLLYEQLG--------YKAFGLV-GKLA 149 infaillnlfGvcivYlifagdnLpaifdsffsdksgendpchislayfi + +i+ +++G++++Yl ++ + Lp +++ + ++++ ++++ ++ KIAA1382 150 ASGSITMQNIGAMSSYLFIVKYELPLVIQALTNIEDKTGLWYLNGNYLVL 199 lifglifipLsvflpnlsaLsilSlvaavssliy.....s..igl.liiv l+++++++pLs +++nl +L+++S++++ +++++ +++ +++ + KIAA1382 200 LVSLVVILPLS-LFRNLGYLGYTSGLSLLCMVFFlivviCkkFQVpCPVE 248 ilvvivvellvltaqgvsllta.......sw.ctPstfiklkglflaiGi ++ +i ++ ++ q+++l++a +++ +++ +c P++fi++ ++ +a++i KIAA1382 249 AALIINETINTTLTQPTALVPAlshnvteNDsCRPHYFIFNSQTVYAVPI 298 ivFAfeGhavllpIqntmksTPskFkskpmtkvllvaiiivtvlyilvGl ++F+f++h +lpI++++k+ +s + m+ v+++++ +++++y l++l KIAA1382 299 LIFSFVCHPAVLPIYEELKD-RSR---RRMMNVSKISFFAMFLMYLLAAL 344 vGYltFGnnvkgnillnlpnsdPnpvwliiivnlllvlhlllsyplqafP +GYltF++ v++++l+++ + + +l iv+l+++ +++l++p++ fP KIAA1382 345 FGYLTFYEHVESELLHTYSSILGTD-ILLLIVRLAVLMAVTLTVPVVIFP 393 ivemienllfrkplednseddeetseilnnasgkhtpkskllrfviRsgl i++ + ll + +s++++ +i++++ KIAA1382 394 IRSSVTHLLC-----------------------ASKDFSWWRHSLITVSI 420 VvvtyliAwiliPflgdllsLvGAtsgapltfilPplfhlklkkpkkksl +++t l+ i++P d+++++GA ++++l+filP+ f++kl k++ ++ KIAA1382 421 LAFTNLLV-IFVPTIRDIFGFIGASAASMLIFILPSAFYIKLVKKE--PM 467 eklwfkkildvicivvglllmaygvyglil<-* + + +ki ++++ g+l+m+++ + ++l KIAA1382 468 KSV--QKIGALFFLLSGVLVMTGSMALIVL 495 PF01490.8.fs: domain 2 of 2, from 281 to 495: score 143.4, E = 5.8e-40 *->ctPstfiklkglflaiGiivFAfeGhavllpIqntmksTPskFkskp c P++fi++ ++ +a++i++F+f++h +lpI++++k+ +s + KIAA1382 281 CRPHYFIFNSQTVYAVPILIFSFVCHPAVLPIYEELKD-RSR---RR 323 mtkvllvaiiivtvlyilvGlvGYltFGnnvkgnillnlpnsdPnpvwli m+ v+++++ +++++y l++l+GYltF++ v++++l+++ + + +l KIAA1382 324 MMNVSKISFFAMFLMYLLAALFGYLTFYEHVESELLHTYSSILGTD-ILL 372 iivnlllvlhlllsyplqafPivemienllfrkplednseddeetseiln iv+l+++ +++l++p++ fPi++ + ll KIAA1382 373 LIVRLAVLMAVTLTVPVVIFPIRSSVTHLLC------------------- 403 nasgkhtpkskllrfviRsglVvvtyliAwiliPflgdllsLvGAtsgap + +s++++ +i+++++++t l+ i++P d+++++GA ++++ KIAA1382 404 ----ASKDFSWWRHSLITVSILAFTNLLV-IFVPTIRDIFGFIGASAASM 448 ltfilPplfhlklkkpkkksleklwfkkildvicivvglllmaygvygli l+filP+ f++kl k++ +++ + +ki ++++ g+l+m+++ + ++ KIAA1382 449 LIFILPSAFYIKLVKKE--PMKSV--QKIGALFFLLSGVLVMTGSMALIV 494 l<-* l KIAA1382 495 L 495 //