hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01124375/chunk_1/iprscan-20080502-01124375.nocrc
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Query sequence: KIAA1380
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 202.2    4.8e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1     999  1223 ..     1   214 []   202.2  4.8e-56

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 999 to 1223: score 202.2, E = 4.8e-56
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      ++++++++l++lP++ey++p+   gk+nl+s+lp     + ++ pd+
    KIAA1380   999    MPARYEDLLKSLPLPEYCNPE---GKFNLASHLP-----GFFVRPDL 1037 

                   gkPkpkpylymGma.E.sr.gstTpwHiDdydlySvNylhqgage.....
                   g   p    ++G+  +++++ +tT++Hi+++d   vN+l++++  ++++ 
    KIAA1380  1038 G---PRLCSAYGVVaAkDHdIGTTNLHIEVSD--VVNILVYVGIAkgngi 1082 

                   ............................d.GKrWyliPpedaeklekllk
                    ++ +  ++ ++++ ++  +++ +++++ +G++W++ +++d++k++++l+
    KIAA1380  1083 lskagilkkfeeedlddilrkrlkdsseIpGALWHIYAGKDVDKIREFLQ 1132 

                   khgkef.hi.stapdlfkeqpdllihlstwispevlkkrlkeeperPlfq
                   k +ke++ +          + +++i++++w+ +++l++rl ee+      
    KIAA1380  1133 KISKEQgLEvL--------PEHDPIRDQSWYVNKKLRQRLLEEY------ 1168 

                   gvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNFaspewlpmglr
                   gv+ ++++Q +G+++++P+G+ H+V+n  +++i+v+ +F+spe+l ++++
    KIAA1380  1169 GVRTCTLIQFLGDAIVLPAGALHQVQNF-HSCIQVTEDFVSPEHLVESFH 1217 

                   lveelr<-*
                   l++elr   
    KIAA1380  1218 LTQELR    1223 

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