hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01110693/chunk_1/iprscan-20080502-01110693.nocrc
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Query sequence: KIAA1379
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00055                                                 109.5    3.8e-28   1
SM00326                                                  71.1    1.4e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00055    1/1      30   118 ..     1   103 []   109.5  3.8e-28
SM00326    1/1     401   457 .]     1    58 []    71.1  1.4e-16

Alignments of top-scoring domains:
SM00055: domain 1 of 1, from 30 to 118: score 109.5, E = 3.8e-28
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      ++fw+++    +++ +++r+++g+rl++dl+++++eRakiE+ Y+++
    KIAA1379    30    DSFWEVG----NYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQ 72   

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   L+ ++k+          +r+ +e ++++gsl+++w  +++e+d++++ h+
    KIAA1379    73 LTDWAKR----------WRQLIEKGPQYGSLERAWGAIMTEADKVSELHQ 112  

                   qlsedL<-*
                   +++++L   
    KIAA1379   113 EVKNNL    118  

SM00326: domain 1 of 1, from 401 to 457: score 71.1, E = 1.4e-16
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                      ++v+AlYDy++q+ dELsFk+GD +t l +++++gW++G+l+ +G+ 
    KIAA1379   401    VRVRALYDYDGQEQDELSFKAGDELTKLGEEdEQGWCRGRLD-SGQL 446  

                   GlfPsnYVeeie<-*
                   Gl P+nYV e     
    KIAA1379   447 GLYPANYV-EAI    457  

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