hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01110693/chunk_1/iprscan-20080502-01110693.nocrc
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Query sequence: KIAA1379
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00611.13.fs Fes/CIP4 homology domain                       111.8    2.6e-32   1
PF00611.13.ls Fes/CIP4 homology domain                       113.6    5.2e-31   1
PF00018.18.ls SH3 domain                                      76.4    8.6e-20   1
PF00018.18.fs SH3 domain                                      74.4    1.4e-19   1
PF07653.7.fs Variant SH3 domain                              32.5      1e-08   1
PF07653.7.ls Variant SH3 domain                              34.3    3.9e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00611.13.fs   1/1      30   118 ..     1   107 []   111.8  2.6e-32
PF00611.13.ls   1/1      30   118 ..     1   107 []   113.6  5.2e-31
PF00018.18.fs   1/1     401   457 .]     1    59 []    74.4  1.4e-19
PF00018.18.ls   1/1     401   457 .]     1    59 []    76.4  8.6e-20
PF07653.7.fs   1/1     402   457 .]     1    69 []    32.5    1e-08
PF07653.7.ls   1/1     402   457 .]     1    69 []    34.3  3.9e-07

Alignments of top-scoring domains:
PF00611.13.fs: domain 1 of 1, from 30 to 118: score 111.8, E = 2.6e-32
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                      d+Fw+++    +yk+++kr+ddg+rl++dl+++++eRakiE+ Y+++
    KIAA1379    30    DSFWEVG----NYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQ 72   

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   L+ ++k+             +++l+ekgp+++s  ++aw  +++e d +s
    KIAA1379    73 LTDWAKR-------------WRQLIEKGPQYGSL-ERAWGAIMTEADKVS 108  

                   klHsqlseqL<-*
                   +lH++++ +L   
    KIAA1379   109 ELHQEVKNNL    118  

PF00611.13.ls: domain 1 of 1, from 30 to 118: score 113.6, E = 5.2e-31
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                      d+Fw+++    +yk+++kr+ddg+rl++dl+++++eRakiE+ Y+++
    KIAA1379    30    DSFWEVG----NYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQ 72   

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   L+ ++k+             +++l+ekgp+++s  ++aw  +++e d +s
    KIAA1379    73 LTDWAKR-------------WRQLIEKGPQYGSL-ERAWGAIMTEADKVS 108  

                   klHsqlseqL<-*
                   +lH++++ +L   
    KIAA1379   109 ELHQEVKNNL    118  

PF00018.18.fs: domain 1 of 1, from 401 to 457: score 74.4, E = 1.4e-19
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       +v+ALYDY+++e dELsFk GD++t l ++d++gW++grl++  G+
    KIAA1379   401    VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS--GQ 445  

                   eGliPsNYVepv<-*
                    Gl P+NYVe +   
    KIAA1379   446 LGLYPANYVEAI    457  

PF00018.18.ls: domain 1 of 1, from 401 to 457: score 76.4, E = 8.6e-20
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       +v+ALYDY+++e dELsFk GD++t l ++d++gW++grl++  G+
    KIAA1379   401    VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS--GQ 445  

                   eGliPsNYVepv<-*
                    Gl P+NYVe +   
    KIAA1379   446 LGLYPANYVEAI    457  

PF07653.7.fs: domain 1 of 1, from 402 to 457: score 32.5, E = 1e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      ++ra+ dy++ +  +e      Ls+k+Gd +  +   g++d  gw++
    KIAA1379   402    RVRALYDYDG-QEQDE------LSFKAGDELTKL---GEEDEQGWCR 438  

                   geslggGrrrRGlvPssaveel<-*
                   g++ + G+   Gl P+++ve +   
    KIAA1379   439 GRL-DSGQL--GLYPANYVEAI    457  

PF07653.7.ls: domain 1 of 1, from 402 to 457: score 34.3, E = 3.9e-07
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      ++ra+ dy++ +  +e      Ls+k+Gd +  +   g++d  gw++
    KIAA1379   402    RVRALYDYDG-QEQDE------LSFKAGDELTKL---GEEDEQGWCR 438  

                   geslggGrrrRGlvPssaveel<-*
                   g++ + G+   Gl P+++ve +   
    KIAA1379   439 GRL-DSGQL--GLYPANYVEAI    457  

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