hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01025575/chunk_1/iprscan-20080502-01025575.nocrc
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Query sequence: KIAA1374
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        89.9    2.2e-24   6
PF00400.22.ls WD domain, G-beta repeat                        87.2    4.7e-23   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   2/6      83   121 ..     1    38 []    24.9  4.7e-06
PF00400.22.ls   1/4      83   121 ..     1    38 []    26.9  6.6e-05
PF00400.22.fs   4/6     165   203 ..     1    38 []    21.9  3.3e-05
PF00400.22.ls   3/4     165   203 ..     1    38 []    23.9  0.00053
PF00400.22.fs   5/6     206   243 ..     1    38 []    33.7  1.6e-08
PF00400.22.ls   4/4     206   243 ..     1    38 []    35.6  1.6e-07

Alignments of top-scoring domains:
PF00400.22.fs: domain 2 of 6, from 83 to 121: score 24.9, E = 4.7e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g + ++ ++H ++V + +++ + g+ l++ ++Dg ikiW+   
    KIAA1374    83    GRVEkSVeAHCGAVLAGRWNYE-GTALVTVGEDGQIKIWS    121  

PF00400.22.ls: domain 1 of 4, from 83 to 121: score 26.9, E = 6.6e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g + ++ ++H ++V + +++ + g+ l++ ++Dg ikiW+   
    KIAA1374    83    GRVEkSVeAHCGAVLAGRWNYE-GTALVTVGEDGQIKIWS    121  

PF00400.22.fs: domain 4 of 6, from 165 to 203: score 21.9, E = 3.3e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +  +++H + +  v+++     l++s+++D++ k+Wd   
    KIAA1374   165    NAKVlQWkAHDGIILKVDWNSV-NDLILSAGEDCKYKVWD    203  

PF00400.22.ls: domain 3 of 4, from 165 to 203: score 23.9, E = 0.00053
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +  +++H + +  v+++     l++s+++D++ k+Wd   
    KIAA1374   165    NAKVlQWkAHDGIILKVDWNSV-NDLILSAGEDCKYKVWD    203  

PF00400.22.fs: domain 5 of 6, from 206 to 243: score 33.7, E = 1.6e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g ++   + H++++t+va++pd g+l+a gS  +t+++ d   
    KIAA1374   206    GRPLyNSqPHEHPITSVAWAPD-GELFAVGSF-HTLRLCD    243  

PF00400.22.ls: domain 4 of 4, from 206 to 243: score 35.6, E = 1.6e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g ++   + H++++t+va++pd g+l+a gS  +t+++ d   
    KIAA1374   206    GRPLyNSqPHEHPITSVAWAPD-GELFAVGSF-HTLRLCD    243  

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