# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj04345.fasta.huge -Q ../query/KIAA1374.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1374, 764 aa vs ./tmplib.24314 library 1986741 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.4139+/-0.00472; mu= 16.4501+/- 0.321 mean_var=89.3230+/-21.418, 0's: 0 Z-trim: 8 B-trim: 0 in 0/40 Lambda= 0.135704 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1942 ( 445 res) fg00781 ( 445) 181 46.2 8.8e-06 KIAA1638 ( 905 res) fj04819s1 ( 905) 154 41.3 0.00053 KIAA1261 ( 787 res) hh15855b ( 787) 150 40.4 0.00084 KIAA1547 ( 863 res) fh14154 ( 863) 147 39.9 0.0013 KIAA1351 ( 1243 res) fj01021s1 (1243) 135 37.7 0.0084 >>KIAA1942 ( 445 res) fg00781 (445 aa) initn: 125 init1: 98 opt: 181 Z-score: 195.6 bits: 46.2 E(): 8.8e-06 Smith-Waterman score: 201; 25.131% identity (54.974% similar) in 191 aa overlap (88-259:208-393) 60 70 80 90 100 110 KIAA13 VKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGE-DGQ : .: : .: :. . :. . .:. . . KIAA19 ALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKN 180 190 200 210 220 230 120 130 140 150 160 KIAA13 IKIWSKTG-----MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQ----PNAK :..:. : . . .. . : .. :.: . :. . . . :. . :. KIAA19 IHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKA 240 250 260 270 280 290 170 180 190 200 210 220 KIAA13 VL--QWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWD----SYGRPLYNSQPHEHPITS . :::: . ..:. . ..::.:.: :.:: . : :. . . : :.:: KIAA19 CMLTTATAHDGDVNVISWSRQEPFLLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTS 300 310 320 330 340 350 230 240 250 260 270 KIAA13 VAWAP-DGELFAV-GSFHTLRLCDKTGWSYALEK-PNTGSIFNIAWSIDGTQIAGACGNG : : : :. .::. :. : . : :. :.:. :..:.. KIAA19 VEWHPQDSGVFAASGADHQI-----TQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQG 360 370 380 390 400 410 280 290 300 310 320 330 KIAA13 HVVFAHVVEQHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVST KIAA19 ETELKELHWHPQCPGLLVSTALSGFTIFRTISV 420 430 440 >>KIAA1638 ( 905 res) fj04819s1 (905 aa) initn: 176 init1: 150 opt: 154 Z-score: 163.7 bits: 41.3 E(): 0.00053 Smith-Waterman score: 154; 20.645% identity (57.419% similar) in 155 aa overlap (578-732:318-471) 550 560 570 580 590 600 KIAA13 PHIVSFVGNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACL .: . . ... :: ..::...... : : KIAA16 TQSGKVNNIYLSTHGFLSNLKDTGPDELRPMLAQNLMLKRFSDAWEMCRILNDEAAWNEL 290 300 310 320 330 340 610 620 630 640 650 660 KIAA13 AAMAVANRDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLL : . . .. : .: ::.. :. ...::.. . . .:. .:... . :. . : KIAA16 ARACLHHMEVEFAIRVYRRIGNVGIVMSLEQIKGIEDYNLLAGHLAMFTNDYNLAQDLYL 350 360 370 380 390 400 670 680 690 700 710 720 KIAA13 QAGLVYQAIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLHYAE .. :... .: .:. ::.:: . .. . . :. . .: :: . KIAA16 ASSCPIAALEMRRDLQHWDSALQLAKHLAPDQIPFISKEYAIQLEFAGDYVNA-LAHYEK 410 420 430 440 450 460 730 740 750 760 KIAA13 GLQIDWEKIKAKIEMEITKEREQSSSSQSSKSIGLKP :. : KIAA16 GITGDNKEHDEACLAGVAQMSIRMGDIRRGVNQALKHPSRVLKRDCGAILENMKQFSEAA 470 480 490 500 510 520 >>KIAA1261 ( 787 res) hh15855b (787 aa) initn: 65 init1: 65 opt: 150 Z-score: 160.2 bits: 40.4 E(): 0.00084 Smith-Waterman score: 150; 26.619% identity (57.554% similar) in 139 aa overlap (104-234:558-692) 80 90 100 110 120 130 KIAA13 GKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQIKIW---SKTGMLRSTL .: .:.. :: . ..:: . : ... : KIAA12 DISHPGNKSPVSQLDCLNRDNYIRSCRLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL 530 540 550 560 570 580 140 150 160 170 180 KIAA13 AQQGTPVYSVAWGPDSEKVLYT--AGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVND .... :..: .::: :: .. . .. . :. .. : :...: .: .. . KIAA12 TSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 590 600 610 620 630 640 190 200 210 220 230 240 KIAA13 LILSAGEDCKYKVWD-SYGRPLYNSQPHEHP--ITSVAWAPDGELFAVGSFHTLRLCDKT . ..: : . :: :: : : :. : :... : :: .::: KIAA12 KLWTGGLDNTVRSWDLREGRQL---QQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLHV 650 660 670 680 690 700 250 260 270 280 290 300 KIAA13 GWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQHWEWKNFQVTLTKRRAM KIAA12 TKPDKYQLHLHESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 710 720 730 740 750 760 >>KIAA1547 ( 863 res) fh14154 (863 aa) initn: 97 init1: 65 opt: 147 Z-score: 156.6 bits: 39.9 E(): 0.0013 Smith-Waterman score: 147; 26.619% identity (56.115% similar) in 139 aa overlap (104-234:634-768) 80 90 100 110 120 130 KIAA13 GKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQIKIW---SKTGMLRSTL .: .:.. :: . . :: : : ... : KIAA15 DISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAEL 610 620 630 640 650 660 140 150 160 170 180 KIAA13 AQQGTPVYSVAWGPDSEKVLYT--AGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVND .... :..: .::. :: .. . .. . :. .. : :...: .: . . KIAA15 TSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGT 670 680 690 700 710 720 190 200 210 220 230 240 KIAA13 LILSAGEDCKYKVWD-SYGRPLYNSQPHEHP--ITSVAWAPDGELFAVGSFHTLRLCDKT . ..: : . :: :: : : :. : :... : :: .::: KIAA15 KLWTGGLDNTVRSWDLREGRQL---QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHH 730 740 750 760 770 250 260 270 280 290 300 KIAA13 GWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQHWEWKNFQVTLTKRRAM KIAA15 TKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 780 790 800 810 820 830 >>KIAA1351 ( 1243 res) fj01021s1 (1243 aa) initn: 94 init1: 62 opt: 135 Z-score: 142.2 bits: 37.7 E(): 0.0084 Smith-Waterman score: 135; 22.674% identity (53.488% similar) in 172 aa overlap (65-226:696-863) 40 50 60 70 80 KIAA13 TQIVKLPDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGK-FHLISKLGRVEKSV---- : ::.:. ::. .:: . . :. :. KIAA13 TELSIVESSVISLLQEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPP 670 680 690 700 710 720 90 100 110 120 130 140 KIAA13 EAHCGAVLAGRWNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPD--SE .. :.. : .: .:: ::....:. : . . . . : .. ..: .. KIAA13 DGSMGSITCIAW--KGDTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQ 730 740 750 760 770 780 150 160 170 180 190 200 KIAA13 KV--LYTAGKQLI-IKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDS :. .:. : .. : .: ... . . :: ::: . . .::.. . : . : KIAA13 KLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMS 790 800 810 820 830 840 210 220 230 240 250 260 KIAA13 YGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAW . . . :. .: .: : KIAA13 MKSACF--RMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPENEE 850 860 870 880 890 900 764 residues in 1 query sequences 1986741 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:45 2008 done: Thu Dec 18 15:19:46 2008 Total Scan time: 0.570 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]