hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00525473/chunk_1/iprscan-20080502-00525473.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1368 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 722.5 2.7e-214 1 PF01403.10.fs Sema domain 720.5 1e-213 1 PF01437.15.fs Plexin repeat 29.3 5.2e-09 1 PF01437.15.ls Plexin repeat 31.1 3.5e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/1 58 493 .. 1 490 [] 720.5 1e-213 PF01403.10.ls 1/1 58 493 .. 1 490 [] 722.5 2.7e-214 PF01437.15.fs 1/1 516 567 .. 1 63 [] 29.3 5.2e-09 PF01437.15.ls 1/1 516 567 .. 1 63 [] 31.1 3.5e-06 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 1, from 58 to 493: score 720.5, E = 1e-213 *->frtllldedrgrLyVGArNhvyvLnledls..er.lqqkigWpsspg +++++ + ++g+Ly++Ar+h+y +++++++++e+ +++k++W+s KIAA1368 58 LDIQMIMIMNGTLYIAARDHIYTVDIDTSHteEIyCSKKLTWKSR-- 102 eekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl +++++ C mkGk+ ++eC+Nfi+VL+++nd+ L+vCGTnaF+P+C+ KIAA1368 103 QADVDTCRMKGKH----KDECHNFIKVLLKKNDDALFVCGTNAFNPSCRN 148 inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt + +++ +++ + e+sG++rCPyd++h+++++++ + KIAA1368 149 YKMDT-------------LEP-FGDEFSGMARCPYDAKHANVALFA-D-- 181 geLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV g+LYs+tv+D F+ +d++I+Rslg+++ lrT +hdskwl+eP+FV KIAA1368 182 GKLYSATVTD------FLAIDAVIYRSLGESPTLRTVKHDSKWLKEPYFV 225 dsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr ++++++ d++YFFFrE+avey+ + gk++++RVa+vCknD+GG KIAA1368 226 QAVDYG-------DYIYFFFREIAVEYN-TMGKVVFPRVAQVCKNDMGGS 267 rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL +++ +++WT+FLKARLnCSvpG ++ +fyFN+LQav + + + KIAA1368 268 QRVLEKQWTSFLKARLNCSVPG-DS--HFYFNILQAVTDVIRING----- 309 gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs rd v+ ++F+t++nsi+g SAVCa+ m dI+ vF G fk+q KIAA1368 310 ----RD-VVLATFSTPYNSIPG----SAVCAYDMLDIASVF-TGRFKEQ- 348 sEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh ++p+s w+p+++++vP+PRPG+C+++ss+++y ++ ++PDdtlnfik+h KIAA1368 349 -KSPDSTWTPVPDERVPKPRPGCCAGSSSLERYATSNEFPDDTLNFIKTH 397 pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd pLmde+vp+++nrP+f +t+v+yrlT+IaVd +ag +q++tV+FlG + KIAA1368 398 PLMDEAVPSIFNRPWFLRTMVRYRLTKIAVD--TAAGPYQNHTVVFLGSE 445 dGtvlKkvvvlsrsss.syeevvleelqvfkdpri..ePvqnleisskq< +G++lK+++++ +s+ + +++lee++v++ ++++ ++v+ +i+ +q KIAA1368 446 KGIILKFLARIGNSGFlN-DSLFLEEMSVYNSEKCsyDGVEDKRIMGMQ 493 -* KIAA1368 - - PF01403.10.ls: domain 1 of 1, from 58 to 493: score 722.5, E = 2.7e-214 *->frtllldedrgrLyVGArNhvyvLnledls..er.lqqkigWpsspg +++++ + ++g+Ly++Ar+h+y +++++++++e+ +++k++W+s KIAA1368 58 LDIQMIMIMNGTLYIAARDHIYTVDIDTSHteEIyCSKKLTWKSR-- 102 eekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl +++++ C mkGk+ ++eC+Nfi+VL+++nd+ L+vCGTnaF+P+C+ KIAA1368 103 QADVDTCRMKGKH----KDECHNFIKVLLKKNDDALFVCGTNAFNPSCRN 148 inlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt + +++ +++ + e+sG++rCPyd++h+++++++ + KIAA1368 149 YKMDT-------------LEP-FGDEFSGMARCPYDAKHANVALFA-D-- 181 geLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV g+LYs+tv+D F+ +d++I+Rslg+++ lrT +hdskwl+eP+FV KIAA1368 182 GKLYSATVTD------FLAIDAVIYRSLGESPTLRTVKHDSKWLKEPYFV 225 dsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr ++++++ d++YFFFrE+avey+ + gk++++RVa+vCknD+GG KIAA1368 226 QAVDYG-------DYIYFFFREIAVEYN-TMGKVVFPRVAQVCKNDMGGS 267 rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL +++ +++WT+FLKARLnCSvpG ++ +fyFN+LQav + + + KIAA1368 268 QRVLEKQWTSFLKARLNCSVPG-DS--HFYFNILQAVTDVIRING----- 309 gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs rd v+ ++F+t++nsi+g SAVCa+ m dI+ vF G fk+q KIAA1368 310 ----RD-VVLATFSTPYNSIPG----SAVCAYDMLDIASVF-TGRFKEQ- 348 sEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh ++p+s w+p+++++vP+PRPG+C+++ss+++y ++ ++PDdtlnfik+h KIAA1368 349 -KSPDSTWTPVPDERVPKPRPGCCAGSSSLERYATSNEFPDDTLNFIKTH 397 pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd pLmde+vp+++nrP+f +t+v+yrlT+IaVd +ag +q++tV+FlG + KIAA1368 398 PLMDEAVPSIFNRPWFLRTMVRYRLTKIAVD--TAAGPYQNHTVVFLGSE 445 dGtvlKkvvvlsrsss.syeevvleelqvfkdpri..ePvqnleisskq< +G++lK+++++ +s+ + +++lee++v++ ++++ ++v+ +i+ +q KIAA1368 446 KGIILKFLARIGNSGFlN-DSLFLEEMSVYNSEKCsyDGVEDKRIMGMQ 493 -* KIAA1368 - - PF01437.15.fs: domain 1 of 1, from 516 to 567: score 29.3, E = 5.2e-09 *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfygeCprse +C++++ C+ C+a+rdp yCgW + g C+++s +r + KIAA1368 516 RCERHGKCkKTCIASRDP-YCGWIKEGGACSHLS-------PNSRLT 554 pendqwldwswssskCp<-* +d++ + + KIAA1368 555 ----FEQDIERGNTDGL 567 PF01437.15.ls: domain 1 of 1, from 516 to 567: score 31.1, E = 3.5e-06 *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfygeCprse +C++++ C+ C+a+rdp yCgW + g C+++s +r + KIAA1368 516 RCERHGKCkKTCIASRDP-YCGWIKEGGACSHLS-------PNSRLT 554 pendqwldwswssskCp<-* +d++ + + KIAA1368 555 ----FEQDIERGNTDGL 567 //