hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00462320/chunk_1/iprscan-20080502-00462320.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1364
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00307.21.ls Calponin homology (CH) domain                  115.6    1.3e-31   1
PF00307.21.fs Calponin homology (CH) domain                  113.7    4.9e-31   1
PF00412.12.fs LIM domain                                      30.5    3.3e-08   1
PF00412.12.ls LIM domain                                      32.5    7.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00307.21.fs   1/1     354   459 ..     1   122 []   113.7  4.9e-31
PF00307.21.ls   1/1     354   459 ..     1   122 []   115.6  1.3e-31
PF00412.12.fs   1/1     627   686 ..     1    61 []    30.5  3.3e-08
PF00412.12.ls   1/1     627   686 ..     1    61 []    32.5  7.8e-07

Alignments of top-scoring domains:
PF00307.21.fs: domain 1 of 1, from 354 to 459: score 113.7, E = 4.9e-31
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                       +   ll W+++++ gy g         v++t+++++w+ +GlaLca
    KIAA1364   354    ARSSKLLGWCQRQTDGYAG---------VNVTDLTMSWK-SGLALCA 390  

                   LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD
                   +++++rP+lid++   sl++++  +N +la+d+aeke lgi  +++++++
    KIAA1364   391 IIHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKE-LGI-SPIMTGKE 435  

                   ivegnpdPDeklvltllwqLirrfq<-*
                   ++++++ PD+++ +++l q++ +f+   
    KIAA1364   436 MASVGE-PDKLSMVMYLTQFYEMFK    459  

PF00307.21.ls: domain 1 of 1, from 354 to 459: score 115.6, E = 1.3e-31
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                       +   ll W+++++ gy g         v++t+++++w+ +GlaLca
    KIAA1364   354    ARSSKLLGWCQRQTDGYAG---------VNVTDLTMSWK-SGLALCA 390  

                   LlnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeD
                   +++++rP+lid++   sl++++  +N +la+d+aeke lgi  +++++++
    KIAA1364   391 IIHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKE-LGI-SPIMTGKE 435  

                   ivegnpdPDeklvltllwqLirrfq<-*
                   ++++++ PD+++ +++l q++ +f+   
    KIAA1364   436 MASVGE-PDKLSMVMYLTQFYEMFK    459  

PF00412.12.fs: domain 1 of 1, from 627 to 686: score 30.5, E = 3.3e-08
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+k++y  e++  A +k +H++CF+C  C ++L  + + + +++
    KIAA1364   627    CYFCQKRVYVMERL-SAEGKFFHRSCFKCEYCATTLRLSAYAYDIED 672  

                   sklYCkhDyyklfg<-*
                   +k+YCk++y+ + +   
    KIAA1364   673 GKFYCKPHYCYRLS    686  

PF00412.12.ls: domain 1 of 1, from 627 to 686: score 32.5, E = 7.8e-07
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+ C+k++y  e++  A +k +H++CF+C  C ++L  + + + +++
    KIAA1364   627    CYFCQKRVYVMERL-SAEGKFFHRSCFKCEYCATTLRLSAYAYDIED 672  

                   sklYCkhDyyklfg<-*
                   +k+YCk++y+ + +   
    KIAA1364   673 GKFYCKPHYCYRLS    686  

//