hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00412699/chunk_1/iprscan-20080502-00412699.nocrc
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Query sequence: KIAA1361
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 309.4    2.5e-88   1
SM00219                                                 108.9    5.9e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      32   283 ..     1   280 []   108.9  5.9e-28
SM00220    1/1      32   285 ..     1   231 []   309.4  2.5e-88

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 32 to 283: score 108.9, E = 5.9e-28
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.......keeF
                       t ++++G+G FG Vy ++  ++++ VA+K++  +++++++++ +++
    KIAA1361    32    FTDLREIGHGSFGAVYFARDVrtnEVVAIKKMS-YSgkqstekWQDI 77   

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   ++E k + ++  kHpN +   G+ + e       +  ++vmEy+ +G+  
    KIAA1361    78 IKEVKFLQRI--KHPNSIEYKGCYLRE-------HTAWLVMEYC-LGSAS 117  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   d L  +++ l+  +   + + + +G +YL+s+  +HRD+ A N+L++e++
    KIAA1361   118 DLLEVHKKPLQEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNILLTEPG 167  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl..
                   +vK +DFG +                +     g+       WmAPE++  
    KIAA1361   168 QVKLADFGSASMASPA-------NSFV-----GTP-----YWMAPEVIla 200  

                   .kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkG
                    ++g +  k DVWS G+++ E+  + ++P  +     m++  +l ++ + 
    KIAA1361   201 mDEGQYDGKVDVWSLGITCIELAER-KPPLFN-----MNAMSALYHIAQN 244  

                   yRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   + +    n       + +d   +   +C +  P dRPt +el + +   
    KIAA1361   245 ESPTLQSN-------EWSDYFRNFVDSCLQKIPQDRPTSEELLKHI    283  

SM00220: domain 1 of 1, from 32 to 285: score 309.4, E = 2.5e-88
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      ++ l+++G+G+FG Vy ard++t+++vAiK+++ ++++++++ ++i+
    KIAA1361    32    FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSysgkqstekwQDII 78   

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   +E+k L++ +HPN + +++++  ++  +lVmEyc G   +  dll+ +++
    KIAA1361    79 KEVKFLQRiKHPNSIEYKGCYLReHTAWLVMEYCLG---SASDLLEVHKK 125  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                   +     l E e++ +++  l++L+YLHs+  iHRD+K  NiLL+++++vK
    KIAA1361   126 P-----LQEvEIAAITHGALQGLAYLHSHTMIHRDIKAGNILLTEpgQVK 170  

                   laDFGlArql...ttfvGTpeYmAPEvl......gYgkpavDiWSlGcil
                   laDFG+A   ++ ++fvGTp++mAPEv+   ++++Y++ +vD+WSlG++ 
    KIAA1361   171 LADFGSASMAspaNSFVGTPYWMAPEVIlamdegQYDG-KVDVWSLGITC 219  

                   yElltGkpPFp...qldlifkkig...........SpeakdLikklLvkd
                   +El+ +kpP  + + + +++++  +++++  ++++S+ ++++++ +L+k 
    KIAA1361   220 IELAERKPPLFnmnAMSALYHIAQnesptlqsnewSDYFRNFVDSCLQKI 269  

                   PekRlta.eaLedeldikaHPff<-*
                   P++R+t +e+L+       H f+   
    KIAA1361   270 PQDRPTSeELLK-------HIFV    285  

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