hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00412699/chunk_1/iprscan-20080502-00412699.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1361 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 274.9 1.4e-79 1 PF00069.15.fs Protein kinase domain 273.1 5.2e-79 1 PF07714.7.fs Protein tyrosine kinase 99.8 7.4e-29 2 PF07714.7.ls Protein tyrosine kinase 96.4 7.9e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 32 285 .. 1 287 [] 273.1 5.2e-79 PF07714.7.fs 1/2 32 175 .. 1 158 [. 83.6 3.5e-24 PF07714.7.ls 1/1 32 283 .. 1 272 [] 96.4 7.9e-26 PF00069.15.ls 1/1 32 285 .. 1 287 [] 274.9 1.4e-79 PF07714.7.fs 2/2 192 283 .. 182 272 .] 16.1 0.00014 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 32 to 285: score 273.1, E = 5.2e-79 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar ++ l+ +G GsfG Vy a+++ t+++VA+K++++++k++ +k++ + KIAA1361 32 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSgKQSTEKWQDII 78 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGL.rvldLfdyl + E++ l+r++HpN +++++++ ++ +lV+Eyc g +++l+ + KIAA1361 79 K--EVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSAsDLLEVH--- 123 setrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnn k+pl +e e+ i l+gl+YLHs+ iHRD+K NILl + KIAA1361 124 -----KKPL--QEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNILLTEP 166 gvvdaflKiaDFGlAkklstsss.lttfvGTpwYmAPEvll..ggngygt g+v K+aDFG+A s++++fvGTp++mAPEv+l + y+ KIAA1361 167 GQV----KLADFGSASM----ASpANSFVGTPYWMAPEVILamDEGQYDG 208 kvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspe kvDvWSlG++++el+ +kpP + + + l+ i+++ +p l ++++ KIAA1361 209 KVDVWSLGITCIELAERKPPLFNM---NaMSALYHIAQNESPTLQSNEW- 254 wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* s+ ++ ++++cL+k P++R+t ee+l+H ++ KIAA1361 255 ---------------SDYFRNFVDSCLQKIPQDRPTSEELLKHIFV 285 PF07714.7.fs: domain 1 of 2, from 32 to 175: score 83.6, E = 3.5e-24 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeei. ++ ++++G+G+FG Vy ++ t+ VA+K++ ++s ++ + KIAA1361 32 FTDLREIGHGSFGAVYFARDV----RTNEVVAIKKM---SYSGKQSt 71 e.redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG e+++d ++E++ + ++ +HpN + + G+ ++ + ++V+Ey+ +G KIAA1361 72 EkWQDIIKEVKFLQRI-KHPNSIEYKGCYLR-EHT----AWLVMEYC-LG 114 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL + d L h ++pL ++ + + +G++YL+s+ ++HRD+ A N+L KIAA1361 115 SASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNIL 162 VsenlvVKIsDFG<-* ++e+++VK +DFG KIAA1361 163 LTEPGQVKLADFG 175 PF07714.7.ls: domain 1 of 1, from 32 to 283: score 96.4, E = 7.9e-26 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeei. ++ ++++G+G+FG Vy ++ t+ VA+K++ ++s ++ + KIAA1361 32 FTDLREIGHGSFGAVYFARDV----RTNEVVAIKKM---SYSGKQSt 71 e.redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG e+++d ++E++ + ++ +HpN + + G+ ++ + ++V+Ey+ +G KIAA1361 72 EkWQDIIKEVKFLQRI-KHPNSIEYKGCYLR-EHT----AWLVMEYC-LG 114 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL + d L h ++pL ++ + + +G++YL+s+ ++HRD+ A N+L KIAA1361 115 SASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNIL 162 VsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygk... ++e+++VK +DFG a + WmAPE++ + +++ KIAA1361 163 LTEPGQVKLADFGSASMA-------SPANSFVGTPYWMAPEVILAMDegq 205 FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPen + k DVWS G+++ E+ ++P +m l +++++ + KIAA1361 206 YDGKVDVWSLGITCIELAE-RKPP-LFNMNAMSALYHIAQNESPTLQSNE 253 CPdelYdlMlqCWaedPedRPtFselveeL<-* +d + +C ++ P+dRPt +el+ ++ KIAA1361 254 WSDYFRNFVDSCLQKIPQDRPTSEELLKHI 283 PF00069.15.ls: domain 1 of 1, from 32 to 285: score 274.9, E = 1.4e-79 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar ++ l+ +G GsfG Vy a+++ t+++VA+K++++++k++ +k++ + KIAA1361 32 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSgKQSTEKWQDII 78 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGL.rvldLfdyl + E++ l+r++HpN +++++++ ++ +lV+Eyc g +++l+ + KIAA1361 79 K--EVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSAsDLLEVH--- 123 setrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnn k+pl +e e+ i l+gl+YLHs+ iHRD+K NILl + KIAA1361 124 -----KKPL--QEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNILLTEP 166 gvvdaflKiaDFGlAkklstsss.lttfvGTpwYmAPEvll..ggngygt g+v K+aDFG+A s++++fvGTp++mAPEv+l + y+ KIAA1361 167 GQV----KLADFGSASM----ASpANSFVGTPYWMAPEVILamDEGQYDG 208 kvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspe kvDvWSlG++++el+ +kpP + + + l+ i+++ +p l ++++ KIAA1361 209 KVDVWSLGITCIELAERKPPLFNM---NaMSALYHIAQNESPTLQSNEW- 254 wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* s+ ++ ++++cL+k P++R+t ee+l+H ++ KIAA1361 255 ---------------SDYFRNFVDSCLQKIPQDRPTSEELLKHIFV 285 PF07714.7.fs: domain 2 of 2, from 192 to 283: score 16.1, E = 0.00014 *->WmAPEslkygk...FtskSDVWSFGVlLWEiftlGeqPFYpgmsnee WmAPE++ + ++++ k DVWS G+++ E+ ++P +m KIAA1361 192 WMAPEVILAMDegqYDGKVDVWSLGITCIELAE-RKPP-LFNMNAMS 236 vlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* l +++++ + +d + +C ++ P+dRPt +el+ ++ KIAA1361 237 ALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHI 283 //