hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00394579/chunk_1/iprscan-20080502-00394579.nocrc
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Query sequence: KIAA1360
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 -56.6    1.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1       2   190 ..     1   231 []   -56.6  1.4e-05

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 2 to 190: score -56.6, E = 1.4e-05
                   *->YellkklGkGaFGkVylardkktgrlvAiKvikerilrEikiLkkdH
                                                                     
    KIAA1360     -    ----------------------------------------------- -    

                   PNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrrglrkvlsE.ea
                                       +++G   d  d    ++       l   e+
    KIAA1360     2 --------------------LMSG---DIGD----YK-------LYDvET 17   

                   rfyfrQilsaLeYLHsq.gIiHRDLKPeNiLLds..hvKlaDFGlArql.
                   ++ + Q+ ++L +LHs  + +H  + PeNi L++++  K+  F ++   +
    KIAA1360    18 KYGLLQVSEGLSFLHSSvKMVHGNITPENIILNKsgAWKIMGFDFCVSSt 67   

                   ...................ttfvGTpeYmAPEvl...gYgkpavDiWSlG
                   ++++++++ + ++ +++ ++ +   peY+APE + + +  + a+D++SlG
    KIAA1360    68 npseqepkfpckewdpnlpSLCLPNPEYLAPEYIlsvSCET-ASDMYSLG 116  

                   cilyEllt.GkpPFp.qldlifkkig.................SpeakdL
                    ++y  + +Gkp F+ + + i+k   +  +  ++ ++++ ++ ++e+++ 
    KIAA1360   117 TVMYAVFNkGKPIFEvNKQDIYKSFSrqldqlsrlgsssltniPEEVREH 166  

                   ikklLvkdPekRlta.eaLedeldikaHPff<-*
                   +k lL++ P+ R+ a++  +        Pff   
    KIAA1360   167 VKLLLNVTPTVRPDAdQMTK-------IPFF    190  

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