hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00394579/chunk_1/iprscan-20080502-00394579.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1360 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.fs Protein kinase domain 22.5 2.9e-06 1 PF02985.12.ls HEAT repeat 21.2 0.0034 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 93 190 .. 176 287 .] 22.5 2.9e-06 PF02985.12.ls 1/2 310 346 .. 1 36 [] 11.5 1.5 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 93 to 190: score 22.5, E = 2.9e-06 *->pwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFs.gevqds p+Y+APE +l + t++D++SlG ++y ++++Gkp+F ++ KIAA1360 93 PEYLAPEYIL-SVSCETASDMYSLGTVMYAVFNkGKPIFEvNK---- 134 ldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnk d ++ + + l + s +i+ ee ++ +k +Ln+ KIAA1360 135 QDIYKSFSRQLDQLSRLGSSSLTNIP-----------EEVREHVKLLLNV 173 DPskRltaeeilqHPwf<-* P+ R+ a++ + P+f KIAA1360 174 TPTVRPDADQMTKIPFF 190 PF02985.12.ls: domain 1 of 2, from 310 to 346: score 11.5, E = 1.5 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++i +++lp++ ++l+ p+ ++e +++ + ++a+ + KIAA1360 310 DeIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLI 346 //