hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00363073/chunk_1/iprscan-20080502-00363073.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1358 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06462.3.ls Propeller 373.3 3.4e-109 9 PF06462.3.fs Propeller 361.0 1.8e-105 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06462.3.fs 1/10 167 198 .. 1 34 [] 41.8 1.9e-09 PF06462.3.ls 1/9 167 198 .. 1 34 [] 43.8 5.5e-10 PF06462.3.ls 2/9 212 243 .. 1 34 [] 36.8 7.1e-08 PF06462.3.fs 2/10 212 243 .. 1 34 [] 34.8 1.2e-07 PF06462.3.ls 3/9 259 290 .. 1 34 [] 41.3 3.1e-09 PF06462.3.fs 3/10 259 290 .. 1 34 [] 39.3 8.3e-09 PF06462.3.ls 4/9 302 334 .. 1 34 [] 42.5 1.3e-09 PF06462.3.fs 4/10 302 334 .. 1 34 [] 40.5 4.2e-09 PF06462.3.ls 5/9 687 714 .. 1 34 [] 43.5 6.7e-10 PF06462.3.fs 5/10 687 714 .. 1 34 [] 41.7 2.1e-09 PF06462.3.fs 7/10 911 942 .. 1 34 [] 42.6 1.3e-09 PF06462.3.ls 6/9 911 942 .. 1 34 [] 44.5 3.4e-10 PF06462.3.fs 8/10 956 987 .. 1 34 [] 36.0 6e-08 PF06462.3.ls 7/9 956 987 .. 1 34 [] 37.9 3.2e-08 PF06462.3.fs 9/10 1002 1033 .. 1 34 [] 41.3 2.7e-09 PF06462.3.ls 8/9 1002 1033 .. 1 34 [] 43.2 8e-10 PF06462.3.fs 10/10 1045 1085 .. 1 34 [] 38.0 1.9e-08 PF06462.3.ls 9/9 1045 1085 .. 1 34 [] 39.9 8e-09 Alignments of top-scoring domains: PF06462.3.fs: domain 1 of 10, from 167 to 198: score 41.8, E = 1.9e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa++ +G++++R+ Vs snP+Gs+ W +++ KIAA1358 167 LSVWAVS-LQGKVWYREDVSHSNPEGSS-WSLLD 198 PF06462.3.ls: domain 1 of 9, from 167 to 198: score 43.8, E = 5.5e-10 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa++ +G++++R+ Vs snP+Gs+ W +++ KIAA1358 167 LSVWAVS-LQGKVWYREDVSHSNPEGSS-WSLLD 198 PF06462.3.ls: domain 2 of 9, from 212 to 243: score 36.8, E = 7.1e-08 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* d +Wa ++G+++vR+G+ rsnP+Gs+ W ++ KIAA1358 212 DLLWATL-WEGQALVREGINRSNPKGSS-WSIVE 243 PF06462.3.fs: domain 2 of 10, from 212 to 243: score 34.8, E = 1.2e-07 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* d +Wa ++G+++vR+G+ rsnP+Gs+ W ++ KIAA1358 212 DLLWATL-WEGQALVREGINRSNPKGSS-WSIVE 243 PF06462.3.ls: domain 3 of 9, from 259 to 290: score 41.3, E = 3.1e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa+t +d ++++R GV + nP G++ W++++ KIAA1358 259 SVVWAVT-KDWKVWFRRGVNSHNPCGTS-WIEMV 290 PF06462.3.fs: domain 3 of 10, from 259 to 290: score 39.3, E = 8.3e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa+t +d ++++R GV + nP G++ W++++ KIAA1358 259 SVVWAVT-KDWKVWFRRGVNSHNPCGTS-WIEMV 290 PF06462.3.ls: domain 4 of 9, from 302 to 334: score 42.5, E = 1.3e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* d+VW+i + d+ +++R GV++s++sG+ W+ i+ KIAA1358 302 DQVWGIGCEDRAVYFRQGVTPSELSGKT-WKAII 334 PF06462.3.fs: domain 4 of 10, from 302 to 334: score 40.5, E = 4.2e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* d+VW+i + d+ +++R GV++s++sG+ W+ i+ KIAA1358 302 DQVWGIGCEDRAVYFRQGVTPSELSGKT-WKAII 334 PF06462.3.ls: domain 5 of 9, from 687 to 714: score 43.5, E = 6.7e-10 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +a+W+it ++Gdif Vs+++P++++ +eh+l KIAA1358 687 QAIWSIT-CKGDIF----VSEPSPDLEA-HEHPL 714 PF06462.3.fs: domain 5 of 10, from 687 to 714: score 41.7, E = 2.1e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +a+W+it ++Gdif Vs+++P++++ +eh+l KIAA1358 687 QAIWSIT-CKGDIF----VSEPSPDLEA-HEHPL 714 PF06462.3.fs: domain 7 of 10, from 911 to 942: score 42.6, E = 1.3e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* a+Wa++ +Gd+++R GVs+ nP+Gs+ W h+ KIAA1358 911 IALWAVS-DKGDVLCRLGVSELNPAGSS-WLHVG 942 PF06462.3.ls: domain 6 of 9, from 911 to 942: score 44.5, E = 3.4e-10 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* a+Wa++ +Gd+++R GVs+ nP+Gs+ W h+ KIAA1358 911 IALWAVS-DKGDVLCRLGVSELNPAGSS-WLHVG 942 PF06462.3.fs: domain 8 of 10, from 956 to 987: score 36.0, E = 6e-08 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa+ dG +f+R +V +s P+G+ W hi+ KIAA1358 956 YQVWAVA-RDGSAFYRGSVYPSQPAGDC-WYHIP 987 PF06462.3.ls: domain 7 of 9, from 956 to 987: score 37.9, E = 3.2e-08 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa+ dG +f+R +V +s P+G+ W hi+ KIAA1358 956 YQVWAVA-RDGSAFYRGSVYPSQPAGDC-WYHIP 987 PF06462.3.fs: domain 9 of 10, from 1002 to 1033: score 41.3, E = 2.7e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +V+a++ +G++++R G+++s P+Gs+ Weh+ KIAA1358 1002 TSVYALD-ENGNLWYRQGITPSYPQGSS-WEHVS 1033 PF06462.3.ls: domain 8 of 9, from 1002 to 1033: score 43.2, E = 8e-10 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +V+a++ +G++++R G+++s P+Gs+ Weh+ KIAA1358 1002 TSVYALD-ENGNLWYRQGITPSYPQGSS-WEHVS 1033 PF06462.3.fs: domain 10 of 10, from 1045 to 1085: score 38.0, E = 1.9e-08 *->daVWaita........sdGdifvRtGVsrsnPsGsdaWehil<-* d+VW+i ++ +++++ s+G++++RtGV++ +P+G + W + + KIAA1358 1045 DQVWVIANkvqgshslSRGTVCHRTGVQPHEPKGHG-WDYGI 1085 PF06462.3.ls: domain 9 of 9, from 1045 to 1085: score 39.9, E = 8e-09 *->daVWaita........sdGdifvRtGVsrsnPsGsdaWehil<-* d+VW+i ++ +++++ s+G++++RtGV++ +P+G + W + + KIAA1358 1045 DQVWVIANkvqgshslSRGTVCHRTGVQPHEPKGHG-WDYGI 1085 //