hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00214206/chunk_1/iprscan-20080502-00214206.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1349 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 588.7 2.1e-172 21 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/21 163 185 .. 1 23 [] 25.0 0.01 SM00355 2/21 191 213 .. 1 23 [] 30.2 0.00029 SM00355 3/21 219 241 .. 1 23 [] 27.6 0.0018 SM00355 4/21 247 267 .. 1 23 [] 13.6 9.1 SM00355 5/21 275 297 .. 1 23 [] 31.7 0.0001 SM00355 6/21 303 325 .. 1 23 [] 30.4 0.00024 SM00355 7/21 331 353 .. 1 23 [] 28.4 0.001 SM00355 8/21 359 381 .. 1 23 [] 29.5 0.00046 SM00355 9/21 387 409 .. 1 23 [] 29.9 0.00034 SM00355 10/21 415 437 .. 1 23 [] 25.5 0.0074 SM00355 11/21 443 465 .. 1 23 [] 30.0 0.00033 SM00355 12/21 471 493 .. 1 23 [] 25.2 0.0094 SM00355 13/21 499 521 .. 1 23 [] 27.4 0.002 SM00355 14/21 527 549 .. 1 23 [] 28.2 0.0011 SM00355 15/21 555 577 .. 1 23 [] 29.2 0.00056 SM00355 16/21 583 605 .. 1 23 [] 32.1 7.8e-05 SM00355 17/21 611 633 .. 1 23 [] 26.2 0.0045 SM00355 18/21 639 661 .. 1 23 [] 27.4 0.002 SM00355 19/21 667 689 .. 1 23 [] 27.3 0.0021 SM00355 20/21 695 717 .. 1 23 [] 31.5 0.00012 SM00355 21/21 723 745 .. 1 23 [] 32.5 5.6e-05 Alignments of top-scoring domains: SM00355: domain 1 of 21, from 163 to 185: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ C k f+ ++ L++H+r+H KIAA1349 163 YKCST-CEKAFHYRsLLIQHQRTH 185 SM00355: domain 2 of 21, from 191 to 213: score 30.2, E = 0.00029 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+++ L +H ++H KIAA1349 191 YECNE-CGKTFSQPsYLSQHKKIH 213 SM00355: domain 3 of 21, from 219 to 241: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f ++L H+r+H KIAA1349 219 YKCNE-CGKAFIASsSLMVHQRIH 241 SM00355: domain 4 of 21, from 247 to 267: score 13.6, E = 9.1 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ L++H+r KIAA1349 247 YQCNV-CGKSFSQCaRLNQHQR-- 267 SM00355: domain 5 of 21, from 275 to 297: score 31.7, E = 0.0001 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+k+ L rH+ +H KIAA1349 275 YKCSE-CGKAFSDKsKLARHQETH 297 SM00355: domain 6 of 21, from 303 to 325: score 30.4, E = 0.00024 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgk f++k+ L H+++H KIAA1349 303 YKCDD-CGKAFRNKsYLSVHQKTH 325 SM00355: domain 7 of 21, from 331 to 353: score 28.4, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf++ + ++ H+r+H KIAA1349 331 YQCNE-CGKSFKNTtIFNVHQRIH 353 SM00355: domain 8 of 21, from 359 to 381: score 29.5, E = 0.00046 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk ++s ++L+ H+r+H KIAA1349 359 FRCNE-CGKAYRSNsSLIVHIRTH 381 SM00355: domain 9 of 21, from 387 to 409: score 29.9, E = 0.00034 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++++H+r+H KIAA1349 387 YECNE-CGKAFNRIaNFTEHQRIH 409 SM00355: domain 10 of 21, from 415 to 437: score 25.5, E = 0.0074 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f +++ L+ H r+H KIAA1349 415 YKCNE-CGKAFINYsCLTVHHRMH 437 SM00355: domain 11 of 21, from 443 to 465: score 30.0, E = 0.00033 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + ++L+ H+r+H KIAA1349 443 YKCTE-CGKAFMRSsSLIIHQRIH 465 SM00355: domain 12 of 21, from 471 to 493: score 25.2, E = 0.0094 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+sf+ k++L+ H+r+H KIAA1349 471 YLCNE-CGESFRIKsHLTVHQRIH 493 SM00355: domain 13 of 21, from 499 to 521: score 27.4, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ C + f+ +Lk+H+++H KIAA1349 499 YKCTD-CERAFTKMvNLKEHQKIH 521 SM00355: domain 14 of 21, from 527 to 549: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC Cgksf++k+ L+ H+r+H KIAA1349 527 YKCYD-CGKSFRTKsYLIVHQRTH 549 SM00355: domain 15 of 21, from 555 to 577: score 29.2, E = 0.00056 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k f++ ++L+ H+r+H KIAA1349 555 YKCNE-CEKAFTNTsQLTVHQRRH 577 SM00355: domain 16 of 21, from 583 to 605: score 32.1, E = 7.8e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f+s + ++ H+r+H KIAA1349 583 YKCNE-CGKVFTSNsGFNTHQRTH 605 SM00355: domain 17 of 21, from 611 to 633: score 26.2, E = 0.0045 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ Cgk fs+ + ++H+++H KIAA1349 611 FKCND-CGKAFSQMvHVTEHQKIH 633 SM00355: domain 18 of 21, from 639 to 661: score 27.4, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L+ H r+H KIAA1349 639 YKCDV-CGKAFRRGsYLTVHWRTH 661 SM00355: domain 19 of 21, from 667 to 689: score 27.3, E = 0.0021 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk + + ++L+ H+r+H KIAA1349 667 YTCKE-CGKGCITLsQLTLHQRIH 689 SM00355: domain 20 of 21, from 695 to 717: score 31.5, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++++ H+r+H KIAA1349 695 YKCEE-CGKAFRTNsDFTVHLRMH 717 SM00355: domain 21 of 21, from 723 to 745: score 32.5, E = 5.6e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+s ++L+ H+r+H KIAA1349 723 YKCNE-CGKAFRSSsSLTVHQRIH 745 //