hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00195538/chunk_1/iprscan-20080502-00195538.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1348 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00332 312.6 2.7e-89 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00332 1/1 109 531 .. 1 338 [] 312.6 2.7e-89 Alignments of top-scoring domains: SM00332: domain 1 of 1, from 109 to 531: score 312.6, E = 2.7e-89 *->es.sgknlglrygl..gessmqgwrkpmEDahvirp.......ffgV + +++++ + +++ ++es++ +++p ED+ + ++++ +fg+ KIAA1348 109 HKiLDLESRVPNSVlrFESNQLAANSPVEDRRGVASclqtnglMFGI 155 fDGHGGseaakflsknlheilaeelsfdkdeslkene.e.lk.d.ep... fDGHGG+++a+ +s++l+ ++a +l ++++ + +e + e++k++ ++ + KIAA1348 156 FDGHGGHACAQAVSERLFYYVAVSLMSHQTLEHMEGAmEsMKpLlPIlhw 205 ...................ess.e.r.ln.gdksledveealrkaFlrtd ++++++ ++ ++ + ++++ +++ l+ ++ +++eeal ++F+r+d KIAA1348 206 lkhpgdsiykdvtsvhldhLRVyWqElLDlHMEMGLSIEEALMYSFQRLD 255 eei........................sTAvvalirgnklyvANvGDSRa ++i+ + + + +++ +++ + + +++TA++a+++g +l+vAN+GD+Ra KIAA1348 256 SDIsleiqapledevtrnlslqvafsgATACMAHVDGIHLHVANAGDCRA 305 vLcrngkd.swegvrtysavqLteDHkpsnedEreRIeaaGGevepidre +L+ + +++ w s+++Lt+DH+++n++E++R++++++e e dr KIAA1348 306 ILGVQEDNgMW------SCLPLTRDHNAWNQAELSRLKREHPESE--DRT 347 fvsngggvvwRvnGvvisLavsRalGDfelKk.ked.e.lie.....en. ++ + R++Gv L + Ra+GD++lK++ke++++++e++ ++e+ KIAA1348 348 IIMED-----RLLGV---LIPCRAFGDVQLKWsKELqRsILErgfntEAl 389 rlyekfdprlpgkepyvsaePevtvvelsqtlvptedddfliLASDGlWD ++y+ f+p+++ ++py++aePevt+++l +++d+fl+LASDGlWD KIAA1348 390 NIYQ-FTPPHYYTPPYLTAEPEVTYHRL------RPQDKFLVLASDGLWD 432 vlsnqeavdivrkhlrkgddk.evksaaqela.r.a.dsl.r..skkhnd +lsn+++v +v hl+++d ++ + +++++++ ++ l+r+ s+ h++ KIAA1348 433 MLSNEDVVRLVVGHLAEADWHkTDLAQRPANLgLmQsLLLqRkaSGLHEA 482 pkeaaklLvdlAl...........................kDNiTvvvv< ++ aa++L++ A+++++ ++ + ++ + +++ + +D+iTv vv KIAA1348 483 DQNAATRLIRHAIgnneygemeaerlaamltlpedlarmyRDDITVTVV 531 -* KIAA1348 - - //