# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj00937.fasta.huge -Q ../query/KIAA1348.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1348, 545 aa
 vs ./tmplib.24314 library

1986960 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1526+/-0.00478; mu= 18.3057+/- 0.326
 mean_var=82.1352+/-19.145, 0's: 0 Z-trim: 4  B-trim: 2 in 1/39
 Lambda= 0.141517

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1157  ( 428 res)   hh05862                     ( 428)  150 40.4 0.00032
KIAA0606  ( 1369 res)   ph00195                    (1369)  132 37.4  0.0082


>>KIAA1157  ( 428 res)   hh05862                          (428 aa)
 initn: 217 init1:  97 opt: 150  Z-score: 167.5  bits: 40.4 E(): 0.00032
Smith-Waterman score: 176;  24.450% identity (50.367% similar) in 409 aa overlap (83-451:3-374)

             60        70        80        90       100       110  
KIAA13 LKWRLFSRVPPTLNSSPCGGFTLCKAYRHTSTEEDDFHLQLSPEQINEVLRAGETTHKIL
                                     ::...:   : : : ..   .:: .:    
KIAA11                             GKSTHNED---QASCEVLTVKKKAGAVTSTPN
                                              10        20         

            120       130       140       150       160       170  
KIAA13 DLESRVPNSVLRFESNQLAANSPVEDRRGVASCLQTNGLMFGIFDGHGGHACAQAVSERL
          :.  .:.   :. ::  ::  :   :: ::      ....::::.: . :       
KIAA11 RNSSKRRSSLPNGEGLQLKENSESE---GV-SCH-----YWSLFDGHAGSGAA-------
      30        40        50                 60        70          

            180       190         200       210       220       230
KIAA13 FYYVAVSLMSHQTLEHMEGAMESMK--PLLPILHWLKHPGDSIYKDVTSVHLDHLRVYWQ
          ::  :..:.  :...  .. .:   .::     ..: ..  .. : ..   ::    
KIAA11 --VVASRLLQHHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLTRAASLRG---
              80        90       100       110       120           

              240       250           260        270       280     
KIAA13 ELLDLHMEMGLSIEEALMYSFQRLDSDI----SLEIQAPLED-EVTRNLSLQVAFSGATA
           .    . :   . ... ...  .     .::      : .. :. :     .: ::
KIAA11 ---GVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSSYNISGGCTA
         130       140       150       160       170       180     

         290       300       310       320       330            340
KIAA13 CMAHVDGIHLHVANAGDCRAILGVQEDNGMWSCLPLTRDHNAWNQAELSRLK-----REH
        ..     .:.:::::: :::. ..  ::    .:.. . .   ..: .::.     . :
KIAA11 LIVICLLGKLYVANAGDSRAII-IR--NG--EIIPMSSEFTP--ETERQRLQYLAFMQPH
         190       200          210         220         230        

                   350       360                 370               
KIAA13 PESEDRTII-----MEDRLLGVLIPCRAFG----------DVQLKW--------SKELQR
         ... : .     .. . ::  .  : :.          : .::.        . ... 
KIAA11 LLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDEDLKFPLIYGEGKKARVMA
      240       250       260       270       280       290        

        380       390       400       410       420           430  
KIAA13 SI-LERGFNTEALNIYQFTPPHYYTPPYLTAEPEVTYHRLRPQDK----FLVLASDGLWD
       .: . ::.. . :....    . :  :.:.. :::  . :   :.     :.::.:::::
KIAA11 TIGVTRGLGDHDLKVHD---SNIYIKPFLSSAPEVRIYDLSKYDHGSDDVLILATDGLWD
      300       310          320       330       340       350     

            440       450       460       470       480       490  
KIAA13 MLSNEDVVRLVVGHLAEADWHKTDLAQRPANLGLMQSLLLQRKASGLHEADQNAATRLIR
       .::::.:.. ..  : . :                                         
KIAA11 VLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGDDIS
         360       370       380       390       400       410     

>>KIAA0606  ( 1369 res)   ph00195                         (1369 aa)
 initn: 105 init1: 105 opt: 132  Z-score: 142.4  bits: 37.4 E(): 0.0082
Smith-Waterman score: 136;  29.825% identity (49.708% similar) in 171 aa overlap (282-443:914-1041)

             260       270       280       290               300   
KIAA13 QRLDSDISLEIQAPLEDEVTRNLSLQVAFSGATACMAHV--DGIH------LHVANAGDC
                                     :..: . :.  : .       :  ::.: :
KIAA06 ELQKTKNEEEYMVNTFIVMQRKLGTAGQKLGGAAVLCHIKHDPVDPGGSFTLTSANVGKC
           890       900       910       920       930       940   

           310       320       330       340       350        360  
KIAA13 RAILGVQEDNGMWSCLPLTRDHNAWNQAELSRLKREHPESEDRTIIMED-RLLGVLIPCR
       ...:     ::  . :::.:..    . ::.:.: .:     ..:: :: .. ::     
KIAA06 QTVLC---RNG--KPLPLSRSYIMSCEEELKRIK-QH-----KAIITEDGKVNGV-----
              950         960       970             980            

            370       380       390       400       410       420  
KIAA13 AFGDVQLKWSKELQRSILERGFNTEALNIYQFTPPHYYTPPYLTAEPEVTYHRLRPQDKF
                              ::.  :  .:  :    : .. .:.:    : :::.:
KIAA06 -----------------------TESTRILGYTFLH----PSVVPRPHVQSVLLTPQDEF
                              990      1000          1010      1020

            430       440       450       460       470       480  
KIAA13 LVLASDGLWDMLSNEDVVRLVVGHLAEADWHKTDLAQRPANLGLMQSLLLQRKASGLHEA
       ..:.: :::: :: :..:. :                                       
KIAA06 FILGSKGLWDSLSVEEAVEAVRNVPDALAAAKKLCTLAQSYGCHDSISAVVVQLSVTEDS
             1030      1040      1050      1060      1070      1080




545 residues in 1 query   sequences
1986960 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:44 2008 done: Thu Dec 18 15:18:45 2008
 Total Scan time:  0.470 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]