hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00163060/chunk_1/iprscan-20080502-00163060.nocrc
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Query sequence: KIAA1346
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                 136.1    3.9e-36   3
SM00608                                                  41.5    7.9e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00608    1/1     500   580 ..     1   152 []    41.5  7.9e-10
SM00209    1/3     594   646 ..     1    66 []    59.5  4.2e-13
SM00209    2/3     889   942 ..     1    66 []    38.4  9.3e-07
SM00209    3/3     943   999 .]     1    66 []    38.1  1.2e-06

Alignments of top-scoring domains:
SM00608: domain 1 of 1, from 500 to 580: score 41.5, E = 7.9e-10
                   *->qDGtPCdngqgYCynGrCptrdqQCqalFGpgAkvApdsCYeevNsk
                      q+ +   ++      G+ ++ ++QCq +FG+++k             
    KIAA1346   500    QNPIQLPGD----LPGTSYDANRQCQFTFGEDSKH------------ 530  

                   GdrfGNCGrensangtyipCapeDvkCGkLqCtnvtelPllgehatviqs
                                      C +    C +L+Ct+                
    KIAA1346   531 -------------------CPDAASTCSTLWCTG---------------- 545  

                   niggyiqkgitCwgtdyhlgtdPvdltidpDpGlVkdGTkCGpgKVCing
                   ++gg     ++C++++++                  dGT+CG+gK+Cing
    KIAA1346   546 TSGG----VLVCQTKHFP---------W-------ADGTSCGEGKWCING 575  

                   rCvdv<-*
                   +Cv++   
    KIAA1346   576 KCVNK    580  

SM00209: domain 1 of 3, from 594 to 646: score 59.5, E = 4.2e-13
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w+ W++W++CS +tCGgG++     +R        c++p p  +ngg
    KIAA1346   594    WGMWGPWGDCS-RTCGGGVQ---YTMR-------ECDNPVP--KNGG 627  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C++++  +r Cn++    +Cp   
    KIAA1346   628 KYCEgkrvRYRSCNLE----DCP    646  

SM00209: domain 2 of 3, from 889 to 942: score 38.4, E = 9.3e-07
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  +eW++CS ++C  G     +++R  +    c + ++    ++ 
    KIAA1346   889    AWVIEEWGECS-KSCELG-----WQRRLVE----CRDING----QPA 921  

                   epCs......EtrpCntqpnLqpCp<-*
                   ++C ++ ++  trpC  +    pCp   
    KIAA1346   922 SECAkevkpaSTRPCADH----PCP    942  

SM00209: domain 3 of 3, from 943 to 999: score 38.1, E = 1.2e-06
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       ++ +eWS+CS +tCG+G      ++R+ +    c s+ ++     +
    KIAA1346   943    QWQLGEWSSCS-KTCGKG-----YKKRSLK----CLSHDGG--VLSH 977  

                   epCs.......EtrpCntqpnLqpCp<-*
                   e+C++ +++++    C++     +C+   
    KIAA1346   978 ESCDplkkpkhFIDFCTMA----ECS    999  

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