hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00163060/chunk_1/iprscan-20080502-00163060.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1346 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05986.4.ls ADAM-TS Spacer 1 184.6 2.3e-52 1 PF05986.4.fs ADAM-TS Spacer 1 182.6 8.7e-52 1 PF01562.9.ls Reprolysin family propeptide 104.4 3.1e-28 1 PF01562.9.fs Reprolysin family propeptide 103.4 6e-28 1 PF00090.9.fs Thrombospondin type 1 domain 75.3 5e-22 4 PF00090.9.ls Thrombospondin type 1 domain 78.3 2.2e-20 3 PF01421.9.ls Reprolysin (M12B) family zinc metallo 5.2 2e-13 1 PF01421.9.fs Reprolysin (M12B) family zinc metallo 39.2 2.5e-10 3 PF08516.2.fs ADAM cysteine-rich 21.3 1.8e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.ls 1/1 66 205 .. 1 165 [] 104.4 3.1e-28 PF01562.9.fs 1/1 66 198 .. 1 154 [. 103.4 6e-28 PF01421.9.ls 1/1 290 499 .. 1 203 [] 5.2 2e-13 PF01421.9.fs 2/3 352 449 .. 62 156 .. 31.6 3.1e-08 PF00090.9.ls 1/3 595 645 .. 1 55 [] 43.8 5.5e-10 PF00090.9.fs 2/4 595 645 .. 1 55 [] 41.9 5.9e-12 PF05986.4.fs 1/1 757 875 .. 1 128 [] 182.6 8.7e-52 PF05986.4.ls 1/1 757 875 .. 1 128 [] 184.6 2.3e-52 PF00090.9.ls 2/3 888 941 .. 1 55 [] 11.1 0.0027 PF00090.9.ls 3/3 944 998 .. 1 55 [] 23.4 9.1e-05 PF00090.9.fs 4/4 947 998 .. 4 55 .] 23.2 2.5e-06 Alignments of top-scoring domains: PF01562.9.ls: domain 1 of 1, from 66 to 205: score 104.4, E = 3.1e-28 *->lLlllllpglaglgaalgtpweyssyEvviPekltsegkrrvkqdld llll ++l++++ alg+p +++E+v+Pe ++++g+++ KIAA1346 66 PTLLLLAAALLAVSDALGRP-SEEDEELVVPELERAPGHGT------ 105 irlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYdedG ++ +l ++ +++ L L++ + +lap+ft++ ++ KIAA1346 106 --------------TRLRLHAFDQQLDLELRPDSSFLAPGFTLQNVGR-- 139 tlvteepliq...dhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsY +e+pl++++ hC+Y G+V+G+p Sa++lS C G RG ++l +++Y KIAA1346 140 KSGSETPLPEtdlAHCFYSGTVNGDPSSAAALSLCE-GVRGAFYLLGEAY 188 gIEPle.sssgfeAQrlPHiiY<-* +I+Pl+ s++ + KIAA1346 189 FIQPLPaASERLA-----TAAP 205 PF01562.9.fs: domain 1 of 1, from 66 to 198: score 103.4, E = 6e-28 *->lLlllllpglaglgaalgtpweyssyEvviPekltsegkrrvkqdld llll ++l++++ alg+p +++E+v+Pe ++++g+++ KIAA1346 66 PTLLLLAAALLAVSDALGRP-SEEDEELVVPELERAPGHGT------ 105 irlkslkeekyeeelsYvlrieGkpyiLhLeknrgllapdftvttYdedG ++ +l ++ +++ L L++ + +lap+ft++ ++ KIAA1346 106 --------------TRLRLHAFDQQLDLELRPDSSFLAPGFTLQNVGR-- 139 tlvteepliq...dhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsY +e+pl++++ hC+Y G+V+G+p Sa++lS C G RG ++l +++Y KIAA1346 140 KSGSETPLPEtdlAHCFYSGTVNGDPSSAAALSLCE-GVRGAFYLLGEAY 188 gIEPlesssg<-* +I+Pl+ +s+ KIAA1346 189 FIQPLPAASE 198 PF01421.9.ls: domain 1 of 1, from 290 to 499: score 5.2, E = 2e-13 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIr. rY+E ++V+D m + +g +++ + ++ + Y+ Ir+ KIAA1346 290 RYVETMLVADQSMAEFHG---SGLKHYLLTLFSVAARLYKH-PSIRn 332 .VvLvgLEIWsdgDkI...nvqsdandTLhsFgeWRetdLlkrksHDn.. +V+Lv + I D ++++v+s+a TL++F +W++++ + + D+++ KIAA1346 333 sVSLVVVKILVIHDEQkgpEVTSNAALTLRNFCNWQKQHNP-PSDRDAeh 381 ...AqLLtgidf....dgntiGaAyvggmCspkrSvGVvqdhspivllvA ++A+L+t d+ ++++ t+G+A vg++C+p+rS+ V++d l A KIAA1346 382 ydtAILFTRQDLcgsqTCDTLGMADVGTVCDPSRSCSVIEDD---GLQAA 428 vtMAHELGHNLGmtHDdkntdgCtCe...gggsCIMnpvas...sspskK t AHELGH + m+HDd + +C ++ ++s M++++s+ ++s + KIAA1346 429 FTTAHELGHVFNMPHDDAK--QCASLngvNQDSHMMASMLSnldHSQPW- 475 kFSnCSkddyqkFltkqkpqCLlNkP<-* S CS +Fl ++ + CL +kP KIAA1346 476 --SPCSAYMITSFLDNGHGECLMDKP 499 PF01421.9.fs: domain 2 of 3, from 352 to 449: score 31.6, E = 3.1e-08 *->nvqsdandTLhsFgeWRetdLlkrksHDn.....AqLLtgidf.... +v+s+a TL++F +W++++ + + D+++ ++A+L+t d+ +++ KIAA1346 352 EVTSNAALTLRNFCNWQKQHNP-PSDRDAehydtAILFTRQDLcgsq 397 dgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmtHD + t+G+A vg++C+p+rS+ V++d l A t AHELGH + m+HD KIAA1346 398 TCDTLGMADVGTVCDPSRSCSVIEDD---GLQAAFTTAHELGHVFNMPHD 444 dkntdgC<-* d + +C KIAA1346 445 DAK--QC 449 PF00090.9.ls: domain 1 of 3, from 595 to 645: score 43.8, E = 5.5e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + W++W +CS TCG+G++ R c++p+P+ gg+ C+g+ ++ + KIAA1346 595 GMWGPWGDCSRTCGGGVQYTMRECDNPVPK-NGGKYCEGKRVR--YR 638 aCdmmdkC<-* C + + C KIAA1346 639 SC-NLEDC 645 PF00090.9.fs: domain 2 of 4, from 595 to 645: score 41.9, E = 5.9e-12 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + W++W +CS TCG+G++ R c++p+P+ gg+ C+g+ ++ + KIAA1346 595 GMWGPWGDCSRTCGGGVQYTMRECDNPVPK-NGGKYCEGKRVR--YR 638 aCdmmdkC<-* C + + C KIAA1346 639 SC-NLEDC 645 PF05986.4.fs: domain 1 of 1, from 757 to 875: score 182.6, E = 8.7e-52 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA k+++G+ t a +GY+d+ tIP GA++I+++++++ g+rn++++LA KIAA1346 757 KKISGSVTSAK--PGYHDIITIPTGATNIEVKQRNQRGSRNNGSFLA 801 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt +k++d G+ yiLNG++t+s+ +++++++G+v++Ys+ s + a+E+++ KIAA1346 802 IKAAD-GT-YILNGDYTLSTLEQDIMYKGVVLRYSG-SSA----ALERIR 844 atGPtnepLivqvLfqggapnpgikYeYtiP<-* +++P++epL++qvL++g+a +p+ikY+Y++ KIAA1346 845 SFSPLKEPLTIQVLTVGNALRPKIKYTYFVK 875 PF05986.4.ls: domain 1 of 1, from 757 to 875: score 184.6, E = 2.3e-52 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA k+++G+ t a +GY+d+ tIP GA++I+++++++ g+rn++++LA KIAA1346 757 KKISGSVTSAK--PGYHDIITIPTGATNIEVKQRNQRGSRNNGSFLA 801 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt +k++d G+ yiLNG++t+s+ +++++++G+v++Ys+ s + a+E+++ KIAA1346 802 IKAAD-GT-YILNGDYTLSTLEQDIMYKGVVLRYSG-SSA----ALERIR 844 atGPtnepLivqvLfqggapnpgikYeYtiP<-* +++P++epL++qvL++g+a +p+ikY+Y++ KIAA1346 845 SFSPLKEPLTIQVLTVGNALRPKIKYTYFVK 875 PF00090.9.ls: domain 2 of 3, from 888 to 941: score 11.1, E = 0.0027 *->spW..seWSpCSVTCGkGirtRqRvc...nspaPqkkggepCtgdvq s W +eW +CS++C G + R c++ n++ P + C +v KIAA1346 888 SAWviEEWGECSKSCELGWQRRLVECrdiNGQ-P----ASECAKEVK 929 eleteaCdmmdkC<-* + t++C ++C KIAA1346 930 PASTRPC-ADHPC 941 PF00090.9.ls: domain 3 of 3, from 944 to 998: score 23.4, E = 9.1e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + +eWS+CS+TCGkG + R +c s ++g+ + + ++ ++ KIAA1346 944 WQLGEWSSCSKTCGKGYKKRSLKCLS-----HDGGVLSHESCDplkk 985 ..leteaCdmmdkC<-* ++ + C +m +C KIAA1346 986 pkHFIDFC-TMAEC 998 PF00090.9.fs: domain 4 of 4, from 947 to 998: score 23.2, E = 2.5e-06 *->seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe......l +eWS+CS+TCGkG + R +c s ++g+ + + ++ ++++ KIAA1346 947 GEWSSCSKTCGKGYKKRSLKCLS-----HDGGVLSHESCDplkkpkH 988 eteaCdmmdkC<-* + C +m +C KIAA1346 989 FIDFC-TMAEC 998 //