hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00145224/chunk_1/iprscan-20080502-00145224.nocrc
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Query sequence: KIAA1345
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  27.9     0.0014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/1    1013  1173 ..     1    92 []    27.9   0.0014

Alignments of top-scoring domains:
SM00239: domain 1 of 1, from 1013 to 1173: score 27.9, E = 0.0014
                   *->tLtvkiisArnLp..................................
                      +L v+i++A ++p +++  ++   ++++++  + ++  ++++ ++++
    KIAA1345  1013    KLLVNIVRAYDIPvrkpavskfqqpsrssrmfsekhaaspstyspth 1059 

                   ...........DPYVkvs..kTkvvkktlsgfNPvWnEesetFeFevpp.
                   + + + +     P+V+vs ++T  ++ t  g NP WnE   ++e++   +
    KIAA1345  1060 nadyplgqvlvRPFVEVSfqRTVCHTTTAEGPNPSWNE---ELELPFRAp 1106 

                   .............s.LeieVyDk......................dfiGr
                   +++ ++ + ++ ++ + i ++D+  ++  +++++++++ +++ ++  +G+
    KIAA1345  1107 ngdystaslqsvkDvVFINIFDEvlhdvleddrergsgihtrierHWLGC 1156 

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   v +p              +s++  + r +     
    KIAA1345  1157 VKMP--------------FSTIYfQARFeSQ    1173 

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